View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4795-Insertion-5 (Length: 653)

Name: NF4795-Insertion-5
Description: NF4795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4795-Insertion-5
NF4795-Insertion-5
[»] chr5 (15 HSPs)
chr5 (8-618)||(13380767-13381386)
chr5 (353-410)||(33752490-33752547)
chr5 (353-410)||(33848129-33848186)
chr5 (363-477)||(12080438-12080563)
chr5 (353-452)||(10053807-10053910)
chr5 (366-418)||(22616715-22616767)
chr5 (366-478)||(33163737-33163858)
chr5 (366-418)||(36055649-36055701)
chr5 (366-417)||(21320973-21321024)
chr5 (370-415)||(41417356-41417401)
chr5 (366-410)||(10237635-10237679)
chr5 (366-418)||(27579248-27579300)
chr5 (314-343)||(42682451-42682480)
chr5 (386-418)||(25654591-25654623)
chr5 (366-410)||(29766584-29766628)
[»] chr2 (18 HSPs)
chr2 (25-344)||(44595815-44596134)
chr2 (366-428)||(17244834-17244896)
chr2 (366-418)||(18059136-18059188)
chr2 (366-418)||(18947384-18947436)
chr2 (366-479)||(6177996-6178120)
chr2 (353-410)||(59382-59439)
chr2 (366-418)||(19093676-19093728)
chr2 (372-471)||(41644101-41644211)
chr2 (365-407)||(18514517-18514559)
chr2 (366-478)||(39788313-39788436)
chr2 (353-410)||(43445343-43445400)
chr2 (368-418)||(15651072-15651122)
chr2 (377-423)||(18779176-18779222)
chr2 (364-410)||(40912472-40912518)
chr2 (424-477)||(18059066-18059119)
chr2 (364-409)||(32652619-32652664)
chr2 (369-426)||(34441646-34441703)
chr2 (447-479)||(18947312-18947344)
[»] chr8 (10 HSPs)
chr8 (58-345)||(3858992-3859279)
chr8 (366-418)||(3038627-3038679)
chr8 (366-418)||(7290941-7290993)
chr8 (366-447)||(6267250-6267331)
chr8 (366-409)||(30651026-30651069)
chr8 (366-418)||(18756441-18756493)
chr8 (366-410)||(34685997-34686041)
chr8 (353-404)||(1872700-1872751)
chr8 (424-477)||(7291010-7291063)
chr8 (369-418)||(28220807-28220856)
[»] chr4 (11 HSPs)
chr4 (353-410)||(28292442-28292499)
chr4 (366-418)||(2570700-2570752)
chr4 (366-410)||(49878897-49878941)
chr4 (219-345)||(30578675-30578808)
chr4 (366-426)||(9743812-9743872)
chr4 (366-409)||(2266639-2266682)
chr4 (424-478)||(2266560-2266614)
chr4 (377-430)||(1012520-1012573)
chr4 (424-477)||(17612625-17612678)
chr4 (353-394)||(22722026-22722067)
chr4 (353-410)||(47237465-47237522)
[»] chr3 (22 HSPs)
chr3 (369-477)||(7758139-7758247)
chr3 (353-410)||(12121235-12121292)
chr3 (366-478)||(32180454-32180577)
chr3 (366-418)||(19606688-19606740)
chr3 (366-417)||(44881012-44881063)
chr3 (369-415)||(45879264-45879310)
chr3 (353-472)||(47871197-47871327)
chr3 (360-415)||(36689668-36689723)
chr3 (363-410)||(40744221-40744268)
chr3 (353-399)||(5125429-5125475)
chr3 (366-428)||(47930431-47930493)
chr3 (353-399)||(54607861-54607907)
chr3 (353-410)||(11019687-11019744)
chr3 (366-423)||(40640400-40640457)
chr3 (366-418)||(26000754-26000806)
chr3 (366-410)||(49359410-49359454)
chr3 (424-479)||(38392330-38392385)
chr3 (366-417)||(38392403-38392454)
chr3 (353-410)||(4556957-4557014)
chr3 (424-477)||(7568430-7568483)
chr3 (424-477)||(42664026-42664079)
chr3 (366-418)||(51878335-51878387)
[»] chr1 (11 HSPs)
chr1 (366-426)||(27118552-27118612)
chr1 (424-479)||(15964391-15964446)
chr1 (366-409)||(47554977-47555020)
chr1 (353-410)||(422192-422249)
chr1 (353-409)||(7842378-7842434)
chr1 (365-418)||(16135544-16135597)
chr1 (366-418)||(13876693-13876745)
chr1 (366-418)||(15964322-15964374)
chr1 (366-409)||(3120645-3120688)
chr1 (358-409)||(28012917-28012968)
chr1 (366-410)||(25943420-25943464)
[»] scaffold0001 (1 HSPs)
scaffold0001 (353-410)||(65979-66036)
[»] scaffold0200 (1 HSPs)
scaffold0200 (366-426)||(24584-24644)
[»] chr6 (4 HSPs)
chr6 (366-418)||(4104238-4104290)
chr6 (366-410)||(6613775-6613819)
chr6 (364-404)||(18306669-18306709)
chr6 (424-477)||(34994122-34994175)
[»] scaffold0312 (1 HSPs)
scaffold0312 (353-410)||(8323-8380)
[»] scaffold0050 (1 HSPs)
scaffold0050 (366-435)||(5811-5880)
[»] chr7 (10 HSPs)
chr7 (366-418)||(4618529-4618581)
chr7 (366-418)||(22955086-22955138)
chr7 (366-418)||(40382111-40382163)
chr7 (366-418)||(49002446-49002498)
chr7 (366-418)||(4902542-4902594)
chr7 (427-479)||(7743224-7743276)
chr7 (366-418)||(8133333-8133385)
chr7 (366-426)||(10675025-10675085)
chr7 (366-418)||(23402146-23402198)
chr7 (366-418)||(7743152-7743204)
[»] scaffold0003 (1 HSPs)
scaffold0003 (353-426)||(107936-108009)
[»] scaffold0262 (1 HSPs)
scaffold0262 (360-410)||(11455-11505)


Alignment Details
Target: chr5 (Bit Score: 468; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 8 - 618
Target Start/End: Original strand, 13380767 - 13381386
Alignment:
Q  8 tgaatctcttcatcttcatcaattgccaccttttatttatttttccaaacaagagaaaactgcccacaatataacatcaaagtgcgtggcataattatca 107  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  13380767 tgaatctcttcatcttcatgaattgccgccttttatttatttttccaaacaagagaaaactgcccacaatataacaacaaagtgtgtggcataattatca 13380866  T
Q  108 gttacaactttcataatgtaattttggtaagccagacacaaaaccaaaactatgaaatacatcaagcaaaagaaagggaagtcataagggattgactttg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||  |||||     
T  13380867 gttacaactttcataatgtaattttggtaagccagacacaaaaccaaaactatgaaatacatcaagcgaaagaaagggaagtcataaggaat--acttta 13380964  T
Q  208 tggccaacatacaaaactggaggcatcagctctattttcaaactcaaacaaaatctgtactttacaaacatcatctatctcaacagttcaaaacaattca 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  13380965 tggccaacatacaaaactggaggcatcagctctattttcaaactcaaacaaaatatgtactttacaaacatcatctatctcaacagttcaaaacaatgca 13381064  T
Q  308 attcctgtttgtagcatcatttatttaaaatcagtaattaaggtaaaatcaaaagtaattaatattttgtatgatgattgatttgtaataaggtaaagtt 407  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  13381065 attccagtttgtagcatcatttatataaaatcagtaattaaggtaaaatcaaaagtaattaatattttgtatgaggattgatttataataaggtaaagtt 13381164  T
Q  408 tagctttagagagatc-----------cactagctgacatgacatcaacagttatattatcgactaaacaaaataatttttctnnnnnnnttagtttaat 496  Q
    |||| |||||||| ||           ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||       |||||||| |    
T  13381165 tagccttagagaggtccaccagcagaacactagctgacatgacatcaacagttatactattgactaaacaaaataatttttctaaaatagttagtttact 13381264  T
Q  497 gaccgcaccgtagaagtgccctttattttattcaaaacgtatcttgatttgtacttgtattaattagtgtattttggtaattttgttaaatagattttat 596  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  13381265 gaccgcaccgtagaattgccctttattttattcaaaacgtatcttgatttgtacttgtattaattagtgtattttggtaattttgttaaatagatttttt 13381364  T
Q  597 aaagtagaggttttttgacccc 618  Q
     |||||||||||||||||||||    
T  13381365 caagtagaggttttttgacccc 13381386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 353 - 410
Target Start/End: Complemental strand, 33752547 - 33752490
Alignment:
Q  353 aaatcaaaagtaattaatattttgtatgatgattgatttgtaataaggtaaagtttag 410  Q
    ||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  33752547 aaatcaaaaataattaatattttgtatgaggattgatttttaataaggtaaagtttag 33752490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 353 - 410
Target Start/End: Complemental strand, 33848186 - 33848129
Alignment:
Q  353 aaatcaaaagtaattaatattttgtatgatgattgatttgtaataaggtaaagtttag 410  Q
    ||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  33848186 aaatcaaaaataattaatattttgtatgaggattgatttttaataaggtaaagtttag 33848129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 363 - 477
Target Start/End: Complemental strand, 12080563 - 12080438
Alignment:
Q  363 taattaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagagagatccac-----------tagctgacatgacatcaacagttat 451  Q
    |||| |||||||||||||| || |||||||||||||||||||||||||  ||| || | |||||           |||||||||||||||||||| ||||    
T  12080563 taataaatattttgtatgaggactgatttgtaataaggtaaagtttagtcttaaagtggtccaccagcaggacactagctgacatgacatcaacaattat 12080464  T
Q  452 attatcgactaaacaaaataattttt 477  Q
     |||||||||||||||||||| ||||    
T  12080463 gttatcgactaaacaaaataactttt 12080438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 353 - 452
Target Start/End: Original strand, 10053807 - 10053910
Alignment:
Q  353 aaatcaaaagtaattaatattttgtatgatgattga--tttgtaataaggtaaagtttagctttagagagatc--cactagctgacatgacatcaacagt 448  Q
    ||||||| ||||||||||||||||||||| || |||  |||||||||| ||||| |||||   ||||| | ||  |||||||||||||||||||||||||    
T  10053807 aaatcaagagtaattaatattttgtatgaggactgatttttgtaataaagtaaaatttagtcgtagagtggtccacactagctgacatgacatcaacagt 10053906  T
Q  449 tata 452  Q
    ||||    
T  10053907 tata 10053910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 22616715 - 22616767
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    |||||||||||||||| || ||||||||||||||||||||||||| |||||||    
T  22616715 ttaatattttgtatgaggactgatttgtaataaggtaaagtttagttttagag 22616767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 366 - 478
Target Start/End: Original strand, 33163737 - 33163858
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagagagatc----------cactagctgacatgacatcaacagttatatta 455  Q
    |||||||||||||||| || ||||||||||||||||||||||||| |||| || | ||          |||||||||||||||||||  |||||||| ||    
T  33163737 ttaatattttgtatgaagactgatttgtaataaggtaaagtttagttttaaagtggtccacagcatgacactagctgacatgacatcggcagttatacta 33163836  T
Q  456 tcgactaaacaaaataatttttc 478  Q
    | |||||||| ||||||||||||    
T  33163837 ttgactaaac-aaataatttttc 33163858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 36055701 - 36055649
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    ||||||| ||||||||  ||||||||||||||||||||||||||| |||||||    
T  36055701 ttaatatcttgtatgagaattgatttgtaataaggtaaagtttagttttagag 36055649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 366 - 417
Target Start/End: Original strand, 21320973 - 21321024
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttaga 417  Q
    |||||||||||||||| ||||||||||||  |||||||||||||| ||||||    
T  21320973 ttaatattttgtatgaggattgatttgtaggaaggtaaagtttagttttaga 21321024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 370 - 415
Target Start/End: Complemental strand, 41417401 - 41417356
Alignment:
Q  370 tattttgtatgatgattgatttgtaataaggtaaagtttagcttta 415  Q
    ||||||||||||||| ||||||||||||||||||| ||||| ||||    
T  41417401 tattttgtatgatgactgatttgtaataaggtaaaatttagtttta 41417356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 410
Target Start/End: Original strand, 10237635 - 10237679
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttag 410  Q
    ||||||||||||| ||||| | |||||||||||||||||||||||    
T  10237635 ttaatattttgtacgatgactaatttgtaataaggtaaagtttag 10237679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 27579248 - 27579300
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    |||||||||||| | | || ||||||||||||||||||||||||| |||||||    
T  27579248 ttaatattttgtttaaggaatgatttgtaataaggtaaagtttagttttagag 27579300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 343
Target Start/End: Original strand, 42682451 - 42682480
Alignment:
Q  314 gtttgtagcatcatttatttaaaatcagta 343  Q
    ||||||||||||||||||||||||||||||    
T  42682451 gtttgtagcatcatttatttaaaatcagta 42682480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 386 - 418
Target Start/End: Original strand, 25654591 - 25654623
Alignment:
Q  386 tgatttgtaataaggtaaagtttagctttagag 418  Q
    ||||||||||||||||||||||||| |||||||    
T  25654591 tgatttgtaataaggtaaagtttagttttagag 25654623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 366 - 410
Target Start/End: Complemental strand, 29766628 - 29766584
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttag 410  Q
    ||||||||||||||||  | | |||||||||||||||||||||||    
T  29766628 ttaatattttgtatgagaactaatttgtaataaggtaaagtttag 29766584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 25 - 344
Target Start/End: Complemental strand, 44596134 - 44595815
Alignment:
Q  25 atcaattgccaccttttatttatttttccaaacaagagaaaactgcccacaatataacatcaaagtgcgtggcataattatcagttacaactttcataat 124  Q
    |||||||||  ||| |||||||||||| |||||||||||| |||||||||||||| ||| ||||||| ||||||| |||||| ||| ||||||||| |||    
T  44596134 atcaattgctgcctcttatttattttttcaaacaagagaacactgcccacaatattacaacaaagtgtgtggcatgattatctgttgcaactttcagaat 44596035  T
Q  125 gtaattttggtaagccagacacaaaaccaaaactatgaaatacatcaagcaaaagaaagggaagtcataagggattgactttgtggccaacatacaaaac 224  Q
    ||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  44596034 gtaattttgataagccagacacagaaccaaaactatgcaatacatcaagcaaaagaaagggaagtcataagggattggctttgtggtcaacatacaaaac 44595935  T
Q  225 tggaggcatcagctctattttcaaactcaaacaaaatctgtactttacaaacatcatctatctcaacagttcaaaacaattcaattcctgtttgtagcat 324  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||| | |||| ||||||| |||||||||||    
T  44595934 tggaggcatcagctctattttcaaactcaaacaaaatatgcactttaccaacatcatctatctcaacagttcagagcaatgcaattccagtttgtagcat 44595835  T
Q  325 catttatttaaaatcagtaa 344  Q
    ||||||||||||||||||||    
T  44595834 catttatttaaaatcagtaa 44595815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 366 - 428
Target Start/End: Complemental strand, 17244896 - 17244834
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagagagatccacta 428  Q
    |||||||||||||||| || ||||||||||||||||||||||||| ||||||| | |||||||    
T  17244896 ttaatattttgtatgaggagtgatttgtaataaggtaaagtttagttttagagtggtccacta 17244834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 18059188 - 18059136
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    ||||||||||||||||||| |||||||||| |||||||||||||| |||||||    
T  18059188 ttaatattttgtatgatgactgatttgtaacaaggtaaagtttagttttagag 18059136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 18947436 - 18947384
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    |||||||||||||||| || ||||||||||||||||||||||||| |||||||    
T  18947436 ttaatattttgtatgaggactgatttgtaataaggtaaagtttagttttagag 18947384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 366 - 479
Target Start/End: Original strand, 6177996 - 6178120
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagagagatc-----------cactagctgacatgacatcaacagttatatt 454  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||| | ||||| | ||           |||||||||||||||||||  |||||||| |    
T  6177996 ttaatattttgtacgatgactgatttgtaataaggtaaagtttagttctagagtggtccaccaacatgacactagctgacatgacatcggcagttatact 6178095  T
Q  455 atcgactaaacaaaataatttttct 479  Q
    || | ||||||||||||| ||||||    
T  6178096 attggctaaacaaaataacttttct 6178120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 353 - 410
Target Start/End: Original strand, 59382 - 59439
Alignment:
Q  353 aaatcaaaagtaattaatattttgtatgatgattgatttgtaataaggtaaagtttag 410  Q
    |||||||||||||||||||||||||| ||||| |||||| ||||||| |||| |||||    
T  59382 aaatcaaaagtaattaatattttgtacgatgactgatttataataagataaaatttag 59439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 19093676 - 19093728
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    ||||||||||||| || || ||||||||||||||||||||||||| |||||||    
T  19093676 ttaatattttgtaagaggactgatttgtaataaggtaaagtttagttttagag 19093728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 372 - 471
Target Start/End: Original strand, 41644101 - 41644211
Alignment:
Q  372 ttttgtatgatgattgatttgtaataaggtaaagtttagctttagagagatccac-----------tagctgacatgacatcaacagttatattatcgac 460  Q
    |||||||||| || ||||||||||||||||| ||||||| ||||||| | |||||           |||||||||||||||||||| ||||||||| | |    
T  41644101 ttttgtatgaggactgatttgtaataaggtagagtttagttttagagtggtccaccagcatgacactagctgacatgacatcaacaattatattattggc 41644200  T
Q  461 taaacaaaata 471  Q
    |||||||||||    
T  41644201 taaacaaaata 41644211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 407
Target Start/End: Complemental strand, 18514559 - 18514517
Alignment:
Q  365 attaatattttgtatgatgattgatttgtaataaggtaaagtt 407  Q
    ||||||||||||||||||||||||||| |||||| ||||||||    
T  18514559 attaatattttgtatgatgattgatttataataaagtaaagtt 18514517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 478
Target Start/End: Complemental strand, 39788436 - 39788313
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagagagatccactagc-----------tgacatgacatcaacagttatatt 454  Q
    ||||||||| ||||||  | ||||||||||||||||||||||||  ||||||| | ||||| |||           |||||||||||| ||||||||| |    
T  39788436 ttaatatttcgtatgagaactgatttgtaataaggtaaagtttatttttagagtggtccaccagcaggacaccaattgacatgacatcgacagttatact 39788337  T
Q  455 atcgactaaacaaaataatttttc 478  Q
    || |||||||||||||| ||||||    
T  39788336 attgactaaacaaaatactttttc 39788313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 353 - 410
Target Start/End: Complemental strand, 43445400 - 43445343
Alignment:
Q  353 aaatcaaaagtaattaatattttgtatgatgattgatttgtaataaggtaaagtttag 410  Q
    ||||||||||||||||||||||||||| | || | ||||||||||| ||||| |||||    
T  43445400 aaatcaaaagtaattaatattttgtataaggactaatttgtaataaagtaaaatttag 43445343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 368 - 418
Target Start/End: Original strand, 15651072 - 15651122
Alignment:
Q  368 aatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    |||||||||||||| || ||||||||||||| ||||||||||  |||||||    
T  15651072 aatattttgtatgaggactgatttgtaataaagtaaagtttaattttagag 15651122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 377 - 423
Target Start/End: Complemental strand, 18779222 - 18779176
Alignment:
Q  377 tatgatgattgatttgtaataaggtaaagtttagctttagagagatc 423  Q
    ||||| || ||||||||||||||||||||||||| ||||||| ||||    
T  18779222 tatgacgactgatttgtaataaggtaaagtttagttttagagtgatc 18779176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 410
Target Start/End: Complemental strand, 40912518 - 40912472
Alignment:
Q  364 aattaatattttgtatgatgattgatttgtaataaggtaaagtttag 410  Q
    |||||||||||||||||| || ||||||||||||| ||||| |||||    
T  40912518 aattaatattttgtatgaggactgatttgtaataaagtaaaatttag 40912472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 18059119 - 18059066
Alignment:
Q  424 cactagctgacatgacatcaacagttatattatcgactaaacaaaataattttt 477  Q
    |||||||| |||||||||| ||| ||||| ||| ||||||||||||||| ||||    
T  18059119 cactagctaacatgacatcgacaattatactattgactaaacaaaataactttt 18059066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 32652619 - 32652664
Alignment:
Q  364 aattaatattttgtatgatgattgatttgtaataaggtaaagttta 409  Q
    |||||||||||||||||| || ||||||||||||| ||||| ||||    
T  32652619 aattaatattttgtatgaggactgatttgtaataaagtaaaattta 32652664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 426
Target Start/End: Complemental strand, 34441703 - 34441646
Alignment:
Q  369 atattttgtatgatgattgatttgtaataaggtaaagtttagctttagagagatccac 426  Q
    ||||||||||||| || |||||||||||||| ||||| |||| |||| || |||||||    
T  34441703 atattttgtatgaggactgatttgtaataagataaagcttagttttaaagtgatccac 34441646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 447 - 479
Target Start/End: Complemental strand, 18947344 - 18947312
Alignment:
Q  447 gttatattatcgactaaacaaaataatttttct 479  Q
    |||||| ||||||||||||||||||||||||||    
T  18947344 gttatactatcgactaaacaaaataatttttct 18947312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 58 - 345
Target Start/End: Original strand, 3858992 - 3859279
Alignment:
Q  58 aagagaaaactgcccacaatataacatcaaagtgcgtggcataattatcagttacaactttcataatgtaattttggtaagccagacacaaaaccaaaac 157  Q
    ||||||| ||||||| |||||| ||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||  |||| |||||||||    
T  3858992 aagagaacactgcccgcaatattacaacaaagtgtgtggcataattatctgttacaactttcagaatgtaattttggtaagccaatcacataaccaaaac 3859091  T
Q  158 tatgaaatacatcaagcaaaagaaagggaagtcataagggattgactttgtggccaacatacaaaactggaggcatcagctctattttcaaactcaaaca 257  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  3859092 tatacaatacatcaagcaaaagaaagggaagtcataagggattgactttgtggtcaacatacaaaactggaggcctcagctctattttcaaactcaaaca 3859191  T
Q  258 aaatctgtactttacaaacatcatctatctcaacagttcaaaacaattcaattcctgtttgtagcatcatttatttaaaatcagtaat 345  Q
    |||| |||||||||| |  ||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||||||||||||||||||    
T  3859192 aaatatgtactttaccattatcatctatctcaacagttcaaagcaatgcaattccagtttgtagcataatttatttaaaatcagtaat 3859279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 3038627 - 3038679
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3038627 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagttttagag 3038679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 7290941 - 7290993
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    |||||||||||||||| ||||||||||||||||| |||||||||| |||||||    
T  7290941 ttaatattttgtatgaggattgatttgtaataagataaagtttagttttagag 7290993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 366 - 447
Target Start/End: Complemental strand, 6267331 - 6267250
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag-agatccactagctgacatgacatcaacag 447  Q
    ||||||||||||||||||| |||||||||||||| |||||||||| |||| || |||  |||||| |||||||||||| ||||    
T  6267331 ttaatattttgtatgatgactgatttgtaataagataaagtttagttttaaagcaga-acactaggtgacatgacatcgacag 6267250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 366 - 409
Target Start/End: Complemental strand, 30651069 - 30651026
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagttta 409  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||    
T  30651069 ttaatatttagtatgatgactgatttgtaataaggtaaagttta 30651026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 18756493 - 18756441
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    |||||||||||||||| ||  ||||||||||||||||||| |||| |||||||    
T  18756493 ttaatattttgtatgaggacagatttgtaataaggtaaagattagttttagag 18756441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 410
Target Start/End: Original strand, 34685997 - 34686041
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttag 410  Q
    |||||||||||||||| || ||||||||||||| |||||||||||    
T  34685997 ttaatattttgtatgaggactgatttgtaataaagtaaagtttag 34686041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 404
Target Start/End: Complemental strand, 1872751 - 1872700
Alignment:
Q  353 aaatcaaaagtaattaatattttgtatgatgattgatttgtaataaggtaaa 404  Q
    ||||||||||||||||||||||||||| | || |||||| |||||| |||||    
T  1872751 aaatcaaaagtaattaatattttgtataaggactgatttataataaagtaaa 1872700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 7291010 - 7291063
Alignment:
Q  424 cactagctgacatgacatcaacagttatattatcgactaaacaaaataattttt 477  Q
    |||||| ||| |||||||| ||||||||| ||| | ||||||||||||||||||    
T  7291010 cactagttgatatgacatcgacagttatactattgcctaaacaaaataattttt 7291063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 28220856 - 28220807
Alignment:
Q  369 atattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    ||||||||||||| || |||||||||||||| ||||| |||| |||||||    
T  28220856 atattttgtatgaggactgatttgtaataagataaagcttagttttagag 28220807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 353 - 410
Target Start/End: Complemental strand, 28292499 - 28292442
Alignment:
Q  353 aaatcaaaagtaattaatattttgtatgatgattgatttgtaataaggtaaagtttag 410  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28292499 aaatcaaaagtaattaatattttgtatgattattgatttgtaataaggtaaagtttag 28292442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 2570700 - 2570752
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    |||||||||||| ||| || ||||||||||||||||||||||||| |||||||    
T  2570700 ttaatattttgtttgaggaatgatttgtaataaggtaaagtttagttttagag 2570752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 410
Target Start/End: Original strand, 49878897 - 49878941
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttag 410  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||    
T  49878897 ttaatattttgtatgatgactgatttataataaggtaaagtttag 49878941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 345
Target Start/End: Original strand, 30578675 - 30578808
Alignment:
Q  219 caaaactggaggcatcagctctattttcaaactcaaacaaaa----tctgtactttacaaacatcatctatctcaacagttcaaaacaattcaattcctg 314  Q
    ||||| ||||||||||| || ||||||||||| |||||||||    |||| ||| ||| ||||||||||||||| | |||||| | |||   || ||| |    
T  30578675 caaaaatggaggcatcaactttattttcaaacgcaaacaaaatatttctgcactctaccaacatcatctatctcgaaagttcagagcaacaaaaatccag 30578774  T
Q  315 tttgt---agcatcatttatttaaaatcagtaat 345  Q
    |||||   |||||||| |||||||||||||||||    
T  30578775 tttgtagcagcatcatatatttaaaatcagtaat 30578808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 426
Target Start/End: Original strand, 9743812 - 9743872
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagagagatccac 426  Q
    |||||||||||||||| || || |||||||||| ||||| ||||| ||||||| |||||||    
T  9743812 ttaatattttgtatgaggactggtttgtaataatgtaaaatttagttttagagtgatccac 9743872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 409
Target Start/End: Complemental strand, 2266682 - 2266639
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagttta 409  Q
    |||||||||||||||| || ||||||||||||| ||||||||||    
T  2266682 ttaatattttgtatgaggactgatttgtaataatgtaaagttta 2266639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 424 - 478
Target Start/End: Complemental strand, 2266614 - 2266560
Alignment:
Q  424 cactagctgacatgacatcaacagttatattatcgactaaacaaaataatttttc 478  Q
    |||||||||||||| |||| ||||||||| ||| | ||||||||||||| |||||    
T  2266614 cactagctgacatggcatcgacagttatactattggctaaacaaaataacttttc 2266560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 430
Target Start/End: Original strand, 1012520 - 1012573
Alignment:
Q  377 tatgatgattgatttgtaataaggtaaagtttagctttagagagatccactagc 430  Q
    ||||| |||||||||||||||||||||| ||||| ||||||  | |||||||||    
T  1012520 tatgaagattgatttgtaataaggtaaaatttagttttagaatggtccactagc 1012573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 17612625 - 17612678
Alignment:
Q  424 cactagctgacatgacatcaacagttatattatcgactaaacaaaataattttt 477  Q
    ||||||||||||||||||| ||||||||| ||| | ||||| ||||||| ||||    
T  17612625 cactagctgacatgacatcgacagttatactattggctaaataaaataactttt 17612678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 394
Target Start/End: Complemental strand, 22722067 - 22722026
Alignment:
Q  353 aaatcaaaagtaattaatattttgtatgatgattgatttgta 394  Q
    |||||||||||||| ||||||||||| ||||| |||||||||    
T  22722067 aaatcaaaagtaatcaatattttgtacgatgaatgatttgta 22722026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 410
Target Start/End: Original strand, 47237465 - 47237522
Alignment:
Q  353 aaatcaaaagtaattaatattttgtatgatgattgatttgtaataaggtaaagtttag 410  Q
    ||||||||||||||||||  ||| ||||| ||  |||||||||||||| |||||||||    
T  47237465 aaatcaaaagtaattaatgctttctatgaggaccgatttgtaataaggaaaagtttag 47237522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 369 - 477
Target Start/End: Complemental strand, 7758247 - 7758139
Alignment:
Q  369 atattttgtatgatgattgatttgtaataaggtaaagtttagctttagagagatccactagctgacatgacatcaacagttatattatcgactaaacaaa 468  Q
    ||||||||||||| || |||||||||| ||| ||||| |||| ||||||| | ||||||||||||||||| |||  || ||||| ||| |||||||||||    
T  7758247 atattttgtatgaagactgatttgtaaaaagataaagcttagttttagagtgctccactagctgacatgatatcggcaattatactattgactaaacaaa 7758148  T
Q  469 ataattttt 477  Q
    |||| ||||    
T  7758147 ataactttt 7758139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 353 - 410
Target Start/End: Complemental strand, 12121292 - 12121235
Alignment:
Q  353 aaatcaaaagtaattaatattttgtatgatgattgatttgtaataaggtaaagtttag 410  Q
    ||||||||||||||||||||||||||| | || | |||||||||||||||||||||||    
T  12121292 aaatcaaaagtaattaatattttgtataaggagttatttgtaataaggtaaagtttag 12121235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 366 - 478
Target Start/End: Complemental strand, 32180577 - 32180454
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagagagatc-----------cactagctgacatgacatcaacagttatatt 454  Q
    |||||||||||||||| || ||||||||||||||||||||||||| ||||||| | ||           ||||||| |||||||||||| |||||||| |    
T  32180577 ttaatattttgtatgaggactgatttgtaataaggtaaagtttagttttagagtggtccaccagcaggacactagccgacatgacatcagcagttatact 32180478  T
Q  455 atcgactaaacaaaataatttttc 478  Q
    || | ||||||||||||| |||||    
T  32180477 attggctaaacaaaataacttttc 32180454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 19606740 - 19606688
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    |||||||||||||||| || ||||||||||||||||||||||||| |||||||    
T  19606740 ttaatattttgtatgaggactgatttgtaataaggtaaagtttagttttagag 19606688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 366 - 417
Target Start/End: Original strand, 44881012 - 44881063
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttaga 417  Q
    |||||||||| ||||| |||||||||||||||||||||||||||| ||||||    
T  44881012 ttaatattttatatgaggattgatttgtaataaggtaaagtttagttttaga 44881063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 369 - 415
Target Start/End: Complemental strand, 45879310 - 45879264
Alignment:
Q  369 atattttgtatgatgattgatttgtaataaggtaaagtttagcttta 415  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||    
T  45879310 atattttgtatgaggactgatttgtaataaggtaaagtttagcttta 45879264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 353 - 472
Target Start/End: Original strand, 47871197 - 47871327
Alignment:
Q  353 aaatcaaaagtaattaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagagagatc-----------cactagctgacatgacat 441  Q
    ||||||||||||||||||||||| ||||| || |||||||||| |  ||||||||||   |||||| ||||           |||||| |||||||||||    
T  47871197 aaatcaaaagtaattaatattttatatgaggactgatttgtaacattgtaaagtttaatcttagagtgatccggcagcaggacactagttgacatgacat 47871296  T
Q  442 caacagttatattatcgactaaacaaaataa 472  Q
    ||||||||||||||| | ||||| |||||||    
T  47871297 caacagttatattattggctaaataaaataa 47871327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 360 - 415
Target Start/End: Original strand, 36689668 - 36689723
Alignment:
Q  360 aagtaattaatattttgtatgatgattgatttgtaataaggtaaagtttagcttta 415  Q
    |||||||||||||||||||||| || | ||||||||||| ||||||||||| ||||    
T  36689668 aagtaattaatattttgtatgaggacttatttgtaataaagtaaagtttagtttta 36689723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 363 - 410
Target Start/End: Complemental strand, 40744268 - 40744221
Alignment:
Q  363 taattaatattttgtatgatgattgatttgtaataaggtaaagtttag 410  Q
    ||||| ||||||||||||| ||||||||||||||||||||| ||||||    
T  40744268 taatttatattttgtatgaggattgatttgtaataaggtaatgtttag 40744221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 399
Target Start/End: Original strand, 5125429 - 5125475
Alignment:
Q  353 aaatcaaaagtaattaatattttgtatgatgattgatttgtaataag 399  Q
    |||||||||||||||||||||||||| || || ||||||||||||||    
T  5125429 aaatcaaaagtaattaatattttgtaagaggactgatttgtaataag 5125475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 428
Target Start/End: Complemental strand, 47930493 - 47930431
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagagagatccacta 428  Q
    |||||||||||||| |||| ||||||||||||| |||||| |||| ||||||| | |||||||    
T  47930493 ttaatattttgtataatgactgatttgtaataaagtaaagcttagttttagagtggtccacta 47930431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 399
Target Start/End: Original strand, 54607861 - 54607907
Alignment:
Q  353 aaatcaaaagtaattaatattttgtatgatgattgatttgtaataag 399  Q
    |||||||||||||||||||||||||| || || ||||||||||||||    
T  54607861 aaatcaaaagtaattaatattttgtaagaagactgatttgtaataag 54607907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 353 - 410
Target Start/End: Original strand, 11019687 - 11019744
Alignment:
Q  353 aaatcaaaagtaattaatattttgtatgatgattgatttgtaataaggtaaagtttag 410  Q
    ||||||||||||||||||||||| || || || |||||||||||||| |||| |||||    
T  11019687 aaatcaaaagtaattaatattttatacgaggactgatttgtaataagataaaatttag 11019744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 423
Target Start/End: Complemental strand, 40640457 - 40640400
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagagagatc 423  Q
    |||||||||||||||| || |||||||||||||  |||||||||| ||||||| ||||    
T  40640457 ttaatattttgtatgaggactgatttgtaataaaataaagtttagttttagagtgatc 40640400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 26000754 - 26000806
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    ||||||||||||||||  | ||||||||||||| ||||||||||| |||||||    
T  26000754 ttaatattttgtatgagtactgatttgtaataaagtaaagtttagttttagag 26000806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 410
Target Start/End: Complemental strand, 49359454 - 49359410
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttag 410  Q
    |||||||||||||||| || |||||| ||||||||||||||||||    
T  49359454 ttaatattttgtatgaggactgatttataataaggtaaagtttag 49359410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 479
Target Start/End: Complemental strand, 38392385 - 38392330
Alignment:
Q  424 cactagctgacatgacatcaacagttatattatcgactaaacaaaataatttttct 479  Q
    |||||||||| |||| |||| |||||||||||| | ||||||||||||| ||||||    
T  38392385 cactagctgatatgatatcagcagttatattattggctaaacaaaataacttttct 38392330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 417
Target Start/End: Complemental strand, 38392454 - 38392403
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttaga 417  Q
    ||||||||||||| ||||| ||||||||||||| ||||| ||||| ||||||    
T  38392454 ttaatattttgtaagatgactgatttgtaataatgtaaaatttagttttaga 38392403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 410
Target Start/End: Original strand, 4556957 - 4557014
Alignment:
Q  353 aaatcaaaagtaattaatattttgtatgatgattgatttgtaataaggtaaagtttag 410  Q
    |||||||||||||||| | |||| ||| | || ||||||||||||||| |||||||||    
T  4556957 aaatcaaaagtaattattgttttttataaggactgatttgtaataaggaaaagtttag 4557014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 7568483 - 7568430
Alignment:
Q  424 cactagctgacatgacatcaacagttatattatcgactaaacaaaataattttt 477  Q
    ||||||||||||| | ||| ||||||||| ||| ||||||||||||||| ||||    
T  7568483 cactagctgacataaaatcgacagttatactattgactaaacaaaataactttt 7568430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 477
Target Start/End: Complemental strand, 42664079 - 42664026
Alignment:
Q  424 cactagctgacatgacatcaacagttatattatcgactaaacaaaataattttt 477  Q
    |||||||||||||||||||||||  |||| ||| ||||||| ||||||| ||||    
T  42664079 cactagctgacatgacatcaacaactatactattgactaaataaaataactttt 42664026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 51878335 - 51878387
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    ||||||||||||||||  | ||| ||||||||||||||||||||  |||||||    
T  51878335 ttaatattttgtatgagtactgaattgtaataaggtaaagtttaattttagag 51878387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 366 - 426
Target Start/End: Original strand, 27118552 - 27118612
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagagagatccac 426  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||| ||||||| |||||||    
T  27118552 ttaatattttgtatgatgactgatttgtaataaggtaaagtatagttttagagtgatccac 27118612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 424 - 479
Target Start/End: Original strand, 15964391 - 15964446
Alignment:
Q  424 cactagctgacatgacatcaacagttatattatcgactaaacaaaataatttttct 479  Q
    ||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||    
T  15964391 cactagctgacatgacatcgacagttatactattggctaaacaaaataatttttct 15964446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 366 - 409
Target Start/End: Original strand, 47554977 - 47555020
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagttta 409  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  47554977 ttaatattttgtatgatgactgatttgtaataaggtaaagttta 47555020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 353 - 410
Target Start/End: Original strand, 422192 - 422249
Alignment:
Q  353 aaatcaaaagtaattaatattttgtatgatgattgatttgtaataaggtaaagtttag 410  Q
    ||||||||||||||||||||||||||||| || | | ||||||||| |||||||||||    
T  422192 aaatcaaaagtaattaatattttgtatgaggactaagttgtaataaagtaaagtttag 422249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 353 - 409
Target Start/End: Original strand, 7842378 - 7842434
Alignment:
Q  353 aaatcaaaagtaattaatattttgtatgatgattgatttgtaataaggtaaagttta 409  Q
    |||||||||||||| |||||||| || || ||||||||||||||||| |||||||||    
T  7842378 aaatcaaaagtaataaatattttttacgaggattgatttgtaataagataaagttta 7842434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 365 - 418
Target Start/End: Original strand, 16135544 - 16135597
Alignment:
Q  365 attaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    |||||||||||||||||  | |||||||||||| |||||||||||| |||||||    
T  16135544 attaatattttgtatgagaactgatttgtaatagggtaaagtttagttttagag 16135597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 13876745 - 13876693
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    ||||||||||||||||  |  |||||||||||||||||||||||| |||||||    
T  13876745 ttaatattttgtatgagtaccgatttgtaataaggtaaagtttagttttagag 13876693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 15964322 - 15964374
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    |||||||||| ||||| || ||||||||||||||||||| ||||| |||||||    
T  15964322 ttaatattttatatgaggactgatttgtaataaggtaaaatttagttttagag 15964374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 409
Target Start/End: Complemental strand, 3120688 - 3120645
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagttta 409  Q
    ||||||| |||||||| || ||||||||||||||||||||||||    
T  3120688 ttaatatattgtatgaggactgatttgtaataaggtaaagttta 3120645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 409
Target Start/End: Original strand, 28012917 - 28012968
Alignment:
Q  358 aaaagtaattaatattttgtatgatgattgatttgtaataaggtaaagttta 409  Q
    |||||||||||||| ||| || || || ||||||||||||||||||||||||    
T  28012917 aaaagtaattaatagtttttacgaggactgatttgtaataaggtaaagttta 28012968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 366 - 410
Target Start/End: Original strand, 25943420 - 25943464
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttag 410  Q
    ||||||||||||| ||||| |||||||||||||| |||| |||||    
T  25943420 ttaatattttgtacgatgactgatttgtaataagataaaatttag 25943464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 353 - 410
Target Start/End: Original strand, 65979 - 66036
Alignment:
Q  353 aaatcaaaagtaattaatattttgtatgatgattgatttgtaataaggtaaagtttag 410  Q
    ||||||||||||||||||||||||||||| || | |||| ||||||||||||||||||    
T  65979 aaatcaaaagtaattaatattttgtatgaggactaatttataataaggtaaagtttag 66036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 366 - 426
Target Start/End: Complemental strand, 24644 - 24584
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagagagatccac 426  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||| | ||||| |||||||    
T  24644 ttaatattttgtacgatgactgatttgtaataaggtaaagtttagttctagagtgatccac 24584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 4104238 - 4104290
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| |||||||    
T  4104238 ttaatattttgtatgaagattgatttgtaataaggcaaagtttagttttagag 4104290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 410
Target Start/End: Complemental strand, 6613819 - 6613775
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttag 410  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||    
T  6613819 ttaatattttgtatgaggattcatttgtaataaggtgaagtttag 6613775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 364 - 404
Target Start/End: Complemental strand, 18306709 - 18306669
Alignment:
Q  364 aattaatattttgtatgatgattgatttgtaataaggtaaa 404  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  18306709 aattaatattttgtacgaggattgatttgtaataaggtaaa 18306669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 477
Target Start/End: Original strand, 34994122 - 34994175
Alignment:
Q  424 cactagctgacatgacatcaacagttatattatcgactaaacaaaataattttt 477  Q
    ||||||| ||||||||||||||| ||||  ||| | ||||||||||||||||||    
T  34994122 cactagccgacatgacatcaacacttattatattggctaaacaaaataattttt 34994175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 353 - 410
Target Start/End: Complemental strand, 8380 - 8323
Alignment:
Q  353 aaatcaaaagtaattaatattttgtatgatgattgatttgtaataaggtaaagtttag 410  Q
    ||||||||||||||||||||||||||||| || | | ||||||||| |||||||||||    
T  8380 aaatcaaaagtaattaatattttgtatgaggactaagttgtaataaagtaaagtttag 8323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 366 - 435
Target Start/End: Original strand, 5811 - 5880
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagagagatccactagctgaca 435  Q
    ||||||||||||||||  | |||||| |||||||||||||||||| ||||||| | ||||||||| ||||    
T  5811 ttaatattttgtatgagaactgatttataataaggtaaagtttagttttagagtggtccactagcagaca 5880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 4618581 - 4618529
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    ||||||||||||||||||| ||||||||| |||| |||||||||| |||||||    
T  4618581 ttaatattttgtatgatgactgatttgtagtaagataaagtttagttttagag 4618529  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 22955138 - 22955086
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    ||||||||||||||||  | ||||||||||||||||||||||||| |||||||    
T  22955138 ttaatattttgtatgagaactgatttgtaataaggtaaagtttagttttagag 22955086  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 40382111 - 40382163
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    |||||||||||||||  || ||||||||||||||||||||||||| |||||||    
T  40382111 ttaatattttgtatgcggactgatttgtaataaggtaaagtttagttttagag 40382163  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 49002446 - 49002498
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    |||||||||||||||| || ||||||||||| ||||||||||||| |||||||    
T  49002446 ttaatattttgtatgaggactgatttgtaatgaggtaaagtttagttttagag 49002498  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 4902542 - 4902594
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    ||||||||||||||||  | | ||||||||||||||||||||||| |||||||    
T  4902542 ttaatattttgtatgagtactaatttgtaataaggtaaagtttagttttagag 4902594  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 427 - 479
Target Start/End: Original strand, 7743224 - 7743276
Alignment:
Q  427 tagctgacatgacatcaacagttatattatcgactaaacaaaataatttttct 479  Q
    |||| ||||||||||| ||||||||| ||| ||||||||||||||| ||||||    
T  7743224 tagccgacatgacatcgacagttatactattgactaaacaaaataacttttct 7743276  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 8133385 - 8133333
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    ||||||||||  |||| || ||||||||||||||||||||||||| |||||||    
T  8133385 ttaatattttacatgaagactgatttgtaataaggtaaagtttagttttagag 8133333  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 426
Target Start/End: Complemental strand, 10675085 - 10675025
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagagagatccac 426  Q
    |||||||||||||||| || | ||||||||||| |||||||||||  |||||| |||||||    
T  10675085 ttaatattttgtatgaggactaatttgtaataaagtaaagtttagtcttagagtgatccac 10675025  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 23402198 - 23402146
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    ||||||||||||| ||||| |||||||||||| | |||||||||| |||||||    
T  23402198 ttaatattttgtacgatgactgatttgtaataggataaagtttagttttagag 23402146  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 7743152 - 7743204
Alignment:
Q  366 ttaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagag 418  Q
    |||||||||| ||||| |  || |||||||||||||||||||||| |||||||    
T  7743152 ttaatattttatatgagggctgctttgtaataaggtaaagtttagttttagag 7743204  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 353 - 426
Target Start/End: Original strand, 107936 - 108009
Alignment:
Q  353 aaatcaaaagtaattaatattttgtatgatgattgatttgtaataaggtaaagtttagctttagagagatccac 426  Q
    |||| |||||||||| || |||| ||||| || ||||||||||||||| |||||||||  |||||| |||||||    
T  107936 aaattaaaagtaatttatgttttctatgaagactgatttgtaataaggaaaagtttagacttagagtgatccac 108009  T

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Target: scaffold0262 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 11505 - 11455
Alignment:
Q  360 aagtaattaatattttgtatgatgattgatttgtaataaggtaaagtttag 410  Q
    ||||||||| |||||||||||| || |||||||||||||| |||| |||||    
T  11505 aagtaattattattttgtatgaggactgatttgtaataagataaaatttag 11455  T

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