View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4795_high_2 (Length: 538)
Name: NF4795_high_2
Description: NF4795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4795_high_2 |
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| [»] scaffold0199 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 233 - 450
Target Start/End: Complemental strand, 10985360 - 10985143
Alignment:
| Q |
233 |
ttgataagtgacaaacgaaaacatttatgtaatcaatattggagagtgttcttgcaaaatacaatgtgaagcataaggtggttacaccataacaacttta |
332 |
Q |
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| T |
10985360 |
ttgatcagtgacaaacgaaaacatttatgtaatcaatattggagagtgttcttgcaaaatacaatgtgaagcataagatggttacaccataacaacttga |
10985261 |
T |
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| Q |
333 |
aacgagttgacaattggaagtctcaaacatattttagagaaagattgatccaaaaagatggatgatacattatgagcttacataacagctttcataacac |
432 |
Q |
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| T |
10985260 |
aacgagttgacaattggaagtctcaaacatattttagagaaagattgatccaaaaagacggatgatacattatgagcttacataacagctttcaaaacac |
10985161 |
T |
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| Q |
433 |
acctgaaattgtaacaat |
450 |
Q |
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| T |
10985160 |
acctgagattataacaat |
10985143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 10990625 - 10990407
Alignment:
| Q |
19 |
gaataaagggacatcatgtaacattgccatagtacttcgtatggaggccattacaaatggagataaaattgatcaacaagcagtattgctnnnnnnn-tg |
117 |
Q |
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| T |
10990625 |
gaataaagggacatcatctaacatttccatagttcttcatatggaggccattacaaatggagataaaactgatcaacatgcggtattgctaaaaaaaatg |
10990526 |
T |
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| Q |
118 |
agatgcccctacacgaaattttgg----------------ttgtcggggtactgatttcatgggacctttcccttcatctttttctaacctttacgtcac |
201 |
Q |
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| T |
10990525 |
agatgctcctacacgaaattttggaaattggaacttttggttgtcggggtactgatttcatgggacctttcccttcatctttttctaacctttatgtcac |
10990426 |
T |
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| Q |
202 |
ctaataaattgaagctata |
220 |
Q |
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| T |
10990425 |
ctaataaattgaagctata |
10990407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 465 - 519
Target Start/End: Original strand, 9288 - 9342
Alignment:
| Q |
465 |
attaaatactgccttataaagagttattaattaatagcatatactatatcatgtc |
519 |
Q |
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| T |
9288 |
attaaatactaccttataaagagttattaattaatagcatatattatgtcatgtc |
9342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 519
Target Start/End: Complemental strand, 38316510 - 38316469
Alignment:
| Q |
478 |
ttataaagagttattaattaatagcatatactatatcatgtc |
519 |
Q |
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| T |
38316510 |
ttataaagagatattaattaatatcatatattatatcatgtc |
38316469 |
T |
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