View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4795_high_8 (Length: 213)
Name: NF4795_high_8
Description: NF4795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4795_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 62 - 197
Target Start/End: Original strand, 39582189 - 39582324
Alignment:
| Q |
62 |
aacaactactggaaccattagagacctgaaaaatgaaaaatctctgttaaaacgtgattggttggttcggattatagatgcacttaatataataatttat |
161 |
Q |
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| T |
39582189 |
aacaactactggaaccattagagacctgaaaaatgaaaaatccctgttaaaacgtgattggttggtttggattatagatgcacttaatataataatttat |
39582288 |
T |
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| Q |
162 |
tttctatggagactagctagagacatccttcctact |
197 |
Q |
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| T |
39582289 |
tttctatggagactagctagagatatccttcctact |
39582324 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 39581544 - 39581600
Alignment:
| Q |
107 |
gttaaaacgtgattggttggttcggattatagatgcacttaatataataatttattt |
163 |
Q |
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| T |
39581544 |
gttaaaacatgattggttggtttggattttcgacgcacttattataataatttattt |
39581600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 39576961 - 39577042
Alignment:
| Q |
82 |
gagacctgaaaaatgaaaaatctctgttaaaacgtgattggttggttcggattatagatgcacttaatataataatttattt |
163 |
Q |
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| T |
39576961 |
gagacatgaaaaaggaaagctctacgttaagacgtgattggttagttaggattttagatacatttattataataatttattt |
39577042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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