View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4795_low_4 (Length: 257)

Name: NF4795_low_4
Description: NF4795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4795_low_4
NF4795_low_4
[»] chr6 (10 HSPs)
chr6 (11-239)||(27878624-27878852)
chr6 (96-239)||(1234875-1235018)
chr6 (96-239)||(26976131-26976274)
chr6 (96-239)||(27873990-27874133)
chr6 (96-239)||(18968051-18968194)
chr6 (11-147)||(30967674-30967810)
chr6 (95-239)||(30986682-30986830)
chr6 (142-239)||(30966826-30966923)
chr6 (11-239)||(23012415-23012642)
chr6 (101-239)||(21966725-21966860)
[»] chr8 (3 HSPs)
chr8 (11-239)||(9444007-9444235)
chr8 (96-239)||(9439372-9439515)
chr8 (113-169)||(4799315-4799371)
[»] chr5 (6 HSPs)
chr5 (11-239)||(41718584-41718812)
chr5 (96-239)||(41723310-41723453)
chr5 (96-239)||(34360130-34360273)
chr5 (96-239)||(29585300-29585443)
chr5 (115-239)||(34352422-34352546)
chr5 (72-140)||(23319392-23319458)
[»] chr4 (15 HSPs)
chr4 (11-239)||(48701736-48701964)
chr4 (11-239)||(42266077-42266305)
chr4 (11-239)||(30950098-30950325)
chr4 (102-239)||(24520031-24520168)
chr4 (94-239)||(42270796-42270941)
chr4 (96-239)||(48697131-48697275)
chr4 (95-239)||(30945476-30945619)
chr4 (96-239)||(10427454-10427597)
chr4 (109-209)||(48782932-48783031)
chr4 (107-175)||(30165900-30165968)
chr4 (149-237)||(17248025-17248112)
chr4 (83-137)||(21515462-21515516)
chr4 (98-175)||(36615361-36615438)
chr4 (162-200)||(1979567-1979604)
chr4 (75-116)||(1999189-1999230)
[»] chr3 (8 HSPs)
chr3 (11-239)||(5823190-5823418)
chr3 (11-239)||(2817178-2817405)
chr3 (96-239)||(5818513-5818656)
chr3 (96-228)||(24659136-24659268)
chr3 (96-239)||(54546058-54546200)
chr3 (104-210)||(4579254-4579360)
chr3 (110-239)||(31204781-31204909)
chr3 (84-140)||(25877086-25877142)
[»] chr2 (11 HSPs)
chr2 (11-239)||(825652-825881)
chr2 (18-239)||(15603051-15603272)
chr2 (105-239)||(5198664-5198798)
chr2 (96-239)||(830308-830452)
chr2 (105-235)||(30396920-30397048)
chr2 (103-238)||(28715937-28716070)
chr2 (96-239)||(31592910-31593051)
chr2 (18-209)||(13843719-13843908)
chr2 (116-231)||(12175768-12175881)
chr2 (96-167)||(13840240-13840311)
chr2 (157-237)||(42117798-42117876)
[»] chr7 (7 HSPs)
chr7 (101-239)||(16183636-16183774)
chr7 (72-239)||(8139940-8140106)
chr7 (16-239)||(8138384-8138602)
chr7 (96-237)||(30235198-30235339)
chr7 (11-99)||(25441073-25441161)
chr7 (96-211)||(36528415-36528529)
chr7 (109-235)||(5102606-5102730)
[»] scaffold0074 (1 HSPs)
scaffold0074 (96-239)||(27226-27369)
[»] chr1 (4 HSPs)
chr1 (96-239)||(46191405-46191546)
chr1 (96-239)||(4130259-4130401)
chr1 (101-239)||(30697120-30697257)
chr1 (96-200)||(364683-364786)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 27878624 - 27878852
Alignment:
Q  11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27878624 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaggggctctgataccactgttaggtaccagag 27878723  T
Q  111 taacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 210  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878724 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 27878823  T
Q  211 ccacggggcaagagtagagaactttcact 239  Q
    |||||||||||||||||||||||||||||    
T  27878824 ccacggggcaagagtagagaactttcact 27878852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 1235018 - 1234875
Alignment:
Q  96 tgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1235018 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 1234919  T
Q  196 aataaggggaaaaaaccacggggcaagagtagagaactttcact 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1234918 aataaggggaaaaaaccacggggcaagagtagagaactttcact 1234875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 26976131 - 26976274
Alignment:
Q  96 tgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26976131 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 26976230  T
Q  196 aataaggggaaaaaaccacggggcaagagtagagaactttcact 239  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  26976231 aataaggggaaaaaaccaaggggcaagagtagagaactttcact 26976274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 27873990 - 27874133
Alignment:
Q  96 tgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27873990 tgttaggtaccagagtaacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 27874089  T
Q  196 aataaggggaaaaaaccacggggcaagagtagagaactttcact 239  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  27874090 aataaagggaaaaaaccacggggcaagagtagagaactttcact 27874133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 18968194 - 18968051
Alignment:
Q  96 tgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  18968194 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaaca 18968095  T
Q  196 aataaggggaaaaaaccacggggcaagagtagagaactttcact 239  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  18968094 aataaggggaaaaaaccacggggcaagagtagaaaactttcact 18968051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 11 - 147
Target Start/End: Complemental strand, 30967810 - 30967674
Alignment:
Q  11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag 110  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  30967810 cacagagcatactaagatttttcttaccacaccactagtttatcgcagcggaataacagctacgaactaaaggctctgataccactgttaggtaccagag 30967711  T
Q  111 taacaaaatattatcacacaactaaaataagagacga 147  Q
    ||||||||||||||||  || ||||||||||||||||    
T  30967710 taacaaaatattatcaagcagctaaaataagagacga 30967674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 30986830 - 30986682
Alignment:
Q  95 ctgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaa---acccctc 191  Q
    |||||||||| ||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||| ||||||| |||||||||||   |||||||    
T  30986830 ctgttaggtatcagagtaacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaata-tttacgtggaaagtacccctc 30986732  T
Q  192 aacaaataagg--ggaaaaaaccacggggcaagagtagagaactttcact 239  Q
    |||||||||||    |||||||||||||||||||||||||||||||||||    
T  30986731 aacaaataaggaaaaaaaaaaccacggggcaagagtagagaactttcact 30986682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 142 - 239
Target Start/End: Complemental strand, 30966923 - 30966826
Alignment:
Q  142 agacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaaccacggggcaagagtagagaactttcact 239  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| || |||| ||||||||||||||||||||||||||||    
T  30966923 agacgagaaaagaggaactgaacacacaata-tttacgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagtagagaactttcact 30966826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 23012415 - 23012642
Alignment:
Q  11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag 110  Q
    |||| ||||||||||| |||||||||||||| |||| |||| |    | |||| |||| |||||| |||| |||||  ||  || |||| |||| || ||    
T  23012415 cacaaagcatactaagttttttcttaccactgcacttgtttgttgatgtggaacaacaactacgagccaatggctcaaatgacattgttgggtaacaaag 23012514  T
Q  111 taacaaaa-tattatcacacaactaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa 208  Q
    ||| |||| ||||||||| |||||||||||||||||||| |||||| ||| |||||||||| || ||||||||||||| | || |||||| | ||| |||    
T  23012515 taaaaaaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacatta-tttacgtggaaactcgtc-acaaattaaggggaaa 23012612  T
Q  209 aaccacggggcaagagtagagaactttcact 239  Q
    |||||  ||||||||||||||||||||||||    
T  23012613 aacca-tgggcaagagtagagaactttcact 23012642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 239
Target Start/End: Complemental strand, 21966860 - 21966725
Alignment:
Q  101 ggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 200  Q
    ||||||| |||||| ||| |||||||| || ||||| ||| | | ||||||||||||||| |||| | ||||||| | ||||||||||||||| ||||||    
T  21966860 ggtaccaaagtaacgaaacattatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatattt-atgtggaaacccctcaataaataa 21966763  T
Q  201 ggggaaaaaaccacggggcaagagtagagaactttcact 239  Q
     |||||||| | | |||||||||||||||||||||||||    
T  21966762 agggaaaaatc-atggggcaagagtagagaactttcact 21966725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 9444007 - 9444235
Alignment:
Q  11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  9444007 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag 9444106  T
Q  111 taacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 210  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444107 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 9444206  T
Q  211 ccacggggcaagagtagagaactttcact 239  Q
    |||||||||||||||||||||||||||||    
T  9444207 ccacggggcaagagtagagaactttcact 9444235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 9439372 - 9439515
Alignment:
Q  96 tgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439372 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 9439471  T
Q  196 aataaggggaaaaaaccacggggcaagagtagagaactttcact 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9439472 aataaggggaaaaaaccacggggcaagagtagagaactttcact 9439515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
Q  113 acaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacaca 169  Q
    |||||||||||||||||  ||||||||||||| |||||||||| || ||||||||||    
T  4799371 acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca 4799315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 41718812 - 41718584
Alignment:
Q  11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  41718812 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag 41718713  T
Q  111 taacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 210  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718712 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 41718613  T
Q  211 ccacggggcaagagtagagaactttcact 239  Q
    |||||||||||||||||||||||||||||    
T  41718612 ccacggggcaagagtagagaactttcact 41718584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 41723453 - 41723310
Alignment:
Q  96 tgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723453 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 41723354  T
Q  196 aataaggggaaaaaaccacggggcaagagtagagaactttcact 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  41723353 aataaggggaaaaaaccacggggcaagagtagagaactttcact 41723310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 34360273 - 34360130
Alignment:
Q  96 tgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34360273 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaaca 34360174  T
Q  196 aataaggggaaaaaaccacggggcaagagtagagaactttcact 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  34360173 aataaggggaaaaaaccacggggcaagagtagagaactttcact 34360130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 29585300 - 29585443
Alignment:
Q  96 tgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    ||||||||| |||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585300 tgttaggtatcagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 29585399  T
Q  196 aataaggggaaaaaaccacggggcaagagtagagaactttcact 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29585400 aataaggggaaaaaaccacggggcaagagtagagaactttcact 29585443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 115 - 239
Target Start/End: Complemental strand, 34352546 - 34352422
Alignment:
Q  115 aaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 214  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352546 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 34352447  T
Q  215 ggggcaagagtagagaactttcact 239  Q
    |||||||||||||||||||||||||    
T  34352446 ggggcaagagtagagaactttcact 34352422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 23319392 - 23319458
Alignment:
Q  72 acgaaccaagggctctgataccactgttaggtaccagagtaacaaaatattatcacacaactaaaataa 140  Q
    |||||||||  |||||||||||||||||||||| || | ||||  |||||||| |||||||||||||||    
T  23319392 acgaaccaaaagctctgataccactgttaggtatcataataac--aatattattacacaactaaaataa 23319458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 48701736 - 48701964
Alignment:
Q  11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  48701736 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag 48701835  T
Q  111 taacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 210  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701836 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 48701935  T
Q  211 ccacggggcaagagtagagaactttcact 239  Q
    |||||||||||||||||||||||||||||    
T  48701936 ccacggggcaagagtagagaactttcact 48701964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 42266305 - 42266077
Alignment:
Q  11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||    
T  42266305 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttagataccagag 42266206  T
Q  111 taacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 210  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266205 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 42266106  T
Q  211 ccacggggcaagagtagagaactttcact 239  Q
    |||||||||||||||||||||||||||||    
T  42266105 ccacggggcaagagtagagaactttcact 42266077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 30950098 - 30950325
Alignment:
Q  11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  30950098 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaggagctctgataccactgttaggtaccagag 30950197  T
Q  111 taacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 210  Q
    ||||||||||||||||| || ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30950198 taacaaaatattatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-gggaaaaaa 30950296  T
Q  211 ccacggggcaagagtagagaactttcact 239  Q
    |||||||||||||||||||||||||||||    
T  30950297 ccacggggcaagagtagagaactttcact 30950325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 102 - 239
Target Start/End: Original strand, 24520031 - 24520168
Alignment:
Q  102 gtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 201  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520031 gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 24520130  T
Q  202 gggaaaaaaccacggggcaagagtagagaactttcact 239  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24520131 gggaaaaaaccacggggcaagagtagagaactttcact 24520168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 94 - 239
Target Start/End: Complemental strand, 42270941 - 42270796
Alignment:
Q  94 actgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa 193  Q
    |||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270941 actgttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa 42270842  T
Q  194 caaataaggggaaaaaaccacggggcaagagtagagaactttcact 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  42270841 caaataaggggaaaaaaccacggggcaagagtagagaactttcact 42270796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 48697131 - 48697275
Alignment:
Q  96 tgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697131 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 48697230  T
Q  196 aataagggg-aaaaaaccacggggcaagagtagagaactttcact 239  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  48697231 aataaggggaaaaaaaccacggggcaagagtagagaactttcact 48697275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 95 - 239
Target Start/End: Original strand, 30945476 - 30945619
Alignment:
Q  95 ctgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 194  Q
    |||||||||| |||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945476 ctgttaggtatcagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 30945575  T
Q  195 aaataaggggaaaaaaccacggggcaagagtagagaactttcact 239  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||    
T  30945576 aaataa-gggaaaaaatcacggggcaagagtagagaactttcact 30945619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 10427597 - 10427454
Alignment:
Q  96 tgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10427597 tgttaggtaccagagtaacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaaca 10427498  T
Q  196 aataaggggaaaaaaccacggggcaagagtagagaactttcact 239  Q
    |||||||||||||||| |||||| || |||||| ||||||||||    
T  10427497 aataaggggaaaaaactacggggaaaaagtagataactttcact 10427454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 209
Target Start/End: Complemental strand, 48783031 - 48782932
Alignment:
Q  109 agtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa 208  Q
    |||| |||||||||||||| | | |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||   |||||||||||| |||||||    
T  48783031 agtatcaaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaata-tttacgtggaaatttctcaacaaataaagggaaaa 48782933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 30165968 - 30165900
Alignment:
Q  107 agagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattt 175  Q
    |||||||||||||| ||||||||||||||||||||| | ||||||| | ||| |||||||| |||||||    
T  30165968 agagtaacaaaataatatcacacaactaaaataagatatgagaaaaaatgaattgaacacataatattt 30165900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 17248112 - 17248025
Alignment:
Q  149 aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttca 237  Q
    ||||||| |||| || ||||||||||| || |||||| |||| || |||||||||||||||||||| ||  ||||||| ||||||||||    
T  17248112 aaaagagaaactaaatacacaatattt-acatggaaatcccttaataaataaggggaaaaaaccaccggataagagtatagaactttca 17248025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 21515462 - 21515516
Alignment:
Q  83 gctctgataccactgttaggtaccagagtaacaaaatattatcacacaactaaaa 137  Q
    |||||||||||| |||| |||| |||||||||||| |||| ||||||||||||||    
T  21515462 gctctgataccattgttgggtatcagagtaacaaagtattttcacacaactaaaa 21515516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 36615361 - 36615438
Alignment:
Q  98 ttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattt 175  Q
    |||||||| ||||||| ||||||||||| ||||  |||||||||| | |||||||||| ||| ||||| ||| |||||    
T  36615361 ttaggtactagagtaataaaatattatcgcacagttaaaataagatatgagaaaagagaaaccgaacatacattattt 36615438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 1979604 - 1979567
Alignment:
Q  162 aacacacaatattttacgtggaaacccctcaacaaataa 200  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  1979604 aacacacaatattt-acgtggaaacccctcaacaaataa 1979567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 1999230 - 1999189
Alignment:
Q  75 aaccaagggctctgataccactgttaggtaccagagtaacaa 116  Q
    ||||||| |||||||||||||||||||||| |||| ||||||    
T  1999230 aaccaagtgctctgataccactgttaggtatcagaataacaa 1999189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 5823190 - 5823418
Alignment:
Q  11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  5823190 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag 5823289  T
Q  111 taacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 210  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823290 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 5823389  T
Q  211 ccacggggcaagagtagagaactttcact 239  Q
    |||||||||||||||||||||||||||||    
T  5823390 ccacggggcaagagtagagaactttcact 5823418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 2817178 - 2817405
Alignment:
Q  11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag 110  Q
    |||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||| ||||||||||  |||| ||||||||||||||||||||||||    
T  2817178 cacatagcatactaagatttttcttaccacaccactagtttattactgcggaataacaactacgaaccagcggctttgataccactgttaggtaccagag 2817277  T
Q  111 taacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaa 210  Q
    ||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2817278 taacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-gggaaaaaa 2817376  T
Q  211 ccacggggcaagagtagagaactttcact 239  Q
    |||| ||||||||||| |||||| |||||    
T  2817377 ccacagggcaagagtaaagaactctcact 2817405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 5818513 - 5818656
Alignment:
Q  96 tgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5818513 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaact 5818612  T
Q  196 aataaggggaaaaaaccacggggcaagagtagagaactttcact 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  5818613 aataaggggaaaaaaccacggggcaagagtagagaactttcact 5818656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 96 - 228
Target Start/End: Original strand, 24659136 - 24659268
Alignment:
Q  96 tgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24659136 tgttaggtaccagagtaataaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaaca 24659235  T
Q  196 aataaggggaaaaaaccacggggcaagagtaga 228  Q
    |||||||||||||||||||||||||||||||||    
T  24659236 aataaggggaaaaaaccacggggcaagagtaga 24659268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 54546200 - 54546058
Alignment:
Q  96 tgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  54546200 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaata-tttacgtggaaacccctcaaca 54546102  T
Q  196 aataaggggaaaaaaccacggggcaagagtagagaactttcact 239  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  54546101 aataaggggaaaaaaccacggggctagagtagagaactttcact 54546058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 4579360 - 4579254
Alignment:
Q  104 accagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg 203  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4579360 accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg 4579261  T
Q  204 gaaaaaa 210  Q
    |||||||    
T  4579260 gaaaaaa 4579254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 110 - 239
Target Start/End: Original strand, 31204781 - 31204909
Alignment:
Q  110 gtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 209  Q
    |||||||||||||| ||| ||  ||||| |||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||    
T  31204781 gtaacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatattt-acgtggaaacccctcaacaaataagaggaaaaa 31204878  T
Q  210 accacgg-ggcaagagtagagaactttcact 239  Q
    | ||||| ||||| |||||||||||||||||    
T  31204879 atcacggaggcaatagtagagaactttcact 31204909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 25877142 - 25877086
Alignment:
Q  84 ctctgataccactgttaggtaccagagtaacaaaatattatcacacaactaaaataa 140  Q
    |||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||    
T  25877142 ctctgataccactgttaggtaccagaataacataatattattacgcaactaaaataa 25877086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 825881 - 825652
Alignment:
Q  11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagag 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  825881 cacagagcatactaagatttttcttaccacttcactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagag 825782  T
Q  111 taacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaa 209  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  825781 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaacaaataaggggaaaaaa 825682  T
Q  210 accacggggcaagagtagagaactttcact 239  Q
    ||||||||||||||||||||||||||||||    
T  825681 accacggggcaagagtagagaactttcact 825652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 15603272 - 15603051
Alignment:
Q  18 catactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaa 117  Q
    ||||||||||| |||||||||||||||| ||||| |  || ||||||||||  |||||||||| | |||||||| ||||||| |||   ||||||| |||    
T  15603272 catactaagatatttcttaccactccaccagttttttgcatcggaataacaattacgaaccaatgactctgatagcactgttgggtgtgagagtaagaaa 15603173  T
Q  118 atattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggg 217  Q
    |||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15603172 atattatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggg 15603073  T
Q  218 gcaagagtagagaactttcact 239  Q
    ||||||||||||||||||||||    
T  15603072 gcaagagtagagaactttcact 15603051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 5198664 - 5198798
Alignment:
Q  105 ccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 204  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198664 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 5198763  T
Q  205 aaaaaaccacggggcaagagtagagaactttcact 239  Q
    |||||||||||||||||||||||||||||||||||    
T  5198764 aaaaaaccacggggcaagagtagagaactttcact 5198798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 830452 - 830308
Alignment:
Q  96 tgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  830452 tgttaggtaccagagtaacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 830353  T
Q  196 aataaggggaa-aaaaccacggggcaagagtagagaactttcact 239  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||    
T  830352 aataaggggaaaaaaaccacggggcaagagtggagaactttcact 830308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 105 - 235
Target Start/End: Original strand, 30396920 - 30397048
Alignment:
Q  105 ccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 204  Q
    |||||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||     
T  30396920 ccagagtagcaaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctcaacaaataaggga 30397017  T
Q  205 aaaaaaccacggggcaagagtagagaacttt 235  Q
    |||||| ||| |||| |||||||||||||||    
T  30397018 aaaaaatcacagggcgagagtagagaacttt 30397048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 103 - 238
Target Start/End: Complemental strand, 28716070 - 28715937
Alignment:
Q  103 taccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagg 202  Q
    ||||||||||||||||||||||||||||  ||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||  ||||||||    
T  28716070 taccagagtaacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaata-tttacgtggaaacccctcattaaataagg 28715972  T
Q  203 ggaaaaaaccacggggcaagagtagagaactttcac 238  Q
    || |||||||||  |  |||| ||||||||||||||    
T  28715971 gg-aaaaaccacaagagaagaatagagaactttcac 28715937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 31592910 - 31593051
Alignment:
Q  96 tgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||| |||| || ||||||| ||||||||||||||  || ||||||||||||||||||||||||  |||| |||||| |||||||||||| | ||||| |    
T  31592910 tgttgggtatcaaagtaacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaata 31593009  T
Q  196 aataaggggaaaaaaccacggggcaagagtagagaactttcact 239  Q
    ||||| |  ||||||||||  |  ||||||||||||||||||||    
T  31593010 aataa-gaaaaaaaaccac-agataagagtagagaactttcact 31593051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 13843719 - 13843908
Alignment:
Q  18 catactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaa 117  Q
    |||||||| ||||||||||||||||||| |||||   ||||||||| |||    |||| |||| |||||| ||||||||  | | || |||||||| |||    
T  13843719 catactaatatttttcttaccactccaccagtttgctacagcggaacaactatcacgagccaatggctctaataccacttgtggctatcagagtaataaa 13843818  T
Q  118 atattatcacacaactaaaataagagacgagaaaagag-gaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 209  Q
    ||||||||||  || |||| ||||    ||||||| ||  || |||  |||||||| ||||||||||||||||||||||||||||| ||||||    
T  13843819 atattatcacgtaagtaaagtaagttttgagaaaaaagaaaaatga--acacaata-tttacgtggaaacccctcaacaaataaggagaaaaa 13843908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 12175768 - 12175881
Alignment:
Q  116 aaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacg 215  Q
    |||||||||||| |||||||||||| ||| || |||| || || |||||||||||||||||  ||||||||  ||||| ||||||  ||||||||| |      
T  12175768 aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttt-tgtggaaacatctcaataaataa-tggaaaaaacaatt 12175865  T
Q  216 gggcaagagtagagaa 231  Q
    || |||||||||||||    
T  12175866 ggacaagagtagagaa 12175881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 13840240 - 13840311
Alignment:
Q  96 tgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacaca 167  Q
    |||| ||||||||| |||||||||||||||||  || || ||||| ||| |||||| ||||||| |||||||    
T  13840240 tgttgggtaccagaataacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccgaacaca 13840311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 42117876 - 42117798
Alignment:
Q  157 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttca 237  Q
    ||||||||| ||||||||| |||| |||||| |||||  |||||||||| ||||||||| | ||| |||||| ||||||||    
T  42117876 aactgaacatacaatattt-acgtagaaacctctcaattaataagggga-aaaaccacgagacaaaagtagataactttca 42117798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 16183636 - 16183774
Alignment:
Q  101 ggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 200  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16183636 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 16183735  T
Q  201 ggggaaaaaaccacggggcaagagtagagaactttcact 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16183736 ggggaaaaaaccacggggcaagagtagagaactttcact 16183774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 72 - 239
Target Start/End: Original strand, 8139940 - 8140106
Alignment:
Q  72 acgaaccaagggctctgataccactgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaat 171  Q
    ||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||| ||||||    
T  8139940 acgaaccaatggctctaataccactgttgggtaccagagtaacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaat 8140039  T
Q  172 attttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcact 239  Q
    | |||| ||||||||||||||||||||||||||| ||||||| |||| |||| |||| ||||||||||    
T  8140040 a-tttatgtggaaacccctcaacaaataaggggagaaaaccatggggtaagattagaaaactttcact 8140106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 8138384 - 8138602
Alignment:
Q  16 agcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaaca 115  Q
    ||||||||||||||||||||||||||| || ||||     | || |||||||  | ||||||||| |||||| ||||||||||| |||| ||||||| ||    
T  8138384 agcatactaagatttttcttaccactcgaccagttg----cggcagaataacgacaacgaaccaatggctctaataccactgttgggtagcagagtatca 8138479  T
Q  116 aaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacg 215  Q
    || ||||||||| || |||||||||||||||||||||||  |||| |||||||| ||  ||| |||||||||||| |||||| ||||||| |||||||||    
T  8138480 aagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagta-attatgtggaaaccccttaacaaacaaggggagaaaaccacg 8138578  T
Q  216 gggcaagagtagagaactttcact 239  Q
     ||||||| |||||||||||||||    
T  8138579 aggcaagattagagaactttcact 8138602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 30235339 - 30235198
Alignment:
Q  96 tgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||| |||||||||||| ||||||||||| ||||| ||||||||| | | ||||||||||||||||||||||||||| |||||||||||||||||||||     
T  30235339 tgttgggtaccagagtagcaaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacg 30235241  T
Q  196 aataagggg-aaaaaaccacggggcaagagtagagaactttca 237  Q
    ||||||||| |||||||||||||  ||||||||| ||||||||    
T  30235240 aataaggggaaaaaaaccacgggataagagtagaaaactttca 30235198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 25441161 - 25441073
Alignment:
Q  11 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgtt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||    
T  25441161 cacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacaactacaaatcaatggctctgataccactgtt 25441073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 36528415 - 36528529
Alignment:
Q  96 tgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||| |||| |||||||||||| ||  || || |||||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| ||     
T  36528415 tgttgggtatcagagtaacaaagtaaaattacgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctccacg 36528513  T
Q  196 aataaggggaaaaaac 211  Q
    |||||||  |||||||    
T  36528514 aataaggaaaaaaaac 36528529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 235
Target Start/End: Original strand, 5102606 - 5102730
Alignment:
Q  109 agtaacaaaatattatcacacaactaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaa 207  Q
    ||||||||||||||||||| |||||||||||| ||| ||| |||||||| ||| || ||| |||| ||||| | |||| |||||||||||||||||| ||    
T  5102606 agtaacaaaatattatcactcaactaaaataaaagatgagaaaaagagggactaaatacataata-tttacat-gaaaaccctcaacaaataagggg-aa 5102702  T
Q  208 aaaccacggggcaagagtagagaacttt 235  Q
    |||||| || ||||||||||| ||||||    
T  5102703 aaaccatggagcaagagtagataacttt 5102730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 27226 - 27369
Alignment:
Q  96 tgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  27226 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaaca 27325  T
Q  196 aataaggggaaaaaaccacggggcaagagtagagaactttcact 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27326 aataaggggaaaaaaccacggggcaagagtagagaactttcact 27369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 46191546 - 46191405
Alignment:
Q  96 tgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    ||||||| |||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  46191546 tgttaggaaccagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacaca--atattttacgtggaaacccctcaaca 46191449  T
Q  196 aataaggggaaaaaaccacggggcaagagtagagaactttcact 239  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  46191448 aataaggggaaaaaaccacgggacaagagtagagaactttcact 46191405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 96 - 239
Target Start/End: Complemental strand, 4130401 - 4130259
Alignment:
Q  96 tgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    ||||||||||  |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| |||||||||    
T  4130401 tgttaggtacttgagtaacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaa-aatttacgtggaaatccctcaaca 4130303  T
Q  196 aataaggggaaaaaaccacggggcaagagtagagaactttcact 239  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  4130302 aataaagggaaaaaaccacggggcaagagtagagaactttcact 4130259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 30697120 - 30697257
Alignment:
Q  101 ggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 200  Q
    ||||| ||||||||||||||||||||| || |||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  30697120 ggtactagagtaacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaatattt-acgtggaaacccctcaacaaataa 30697218  T
Q  201 ggggaaaaaaccacggggcaagagtagagaactttcact 239  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  30697219 ggggaaaaagccacgtggcaagagtagagaactttcact 30697257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 200
Target Start/End: Complemental strand, 364786 - 364683
Alignment:
Q  96 tgttaggtaccagagtaacaaaatattatcacacaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 195  Q
    |||| ||||| ||||||| |||||| ||||| |||| |||||||| ||| ||||||| |||||  || ||||||||| ||||||| ||| ||||| |||     
T  364786 tgtttggtacgagagtaataaaataatatcatacaattaaaataatagatgagaaaaaaggaatcgaccacacaata-tttacgttgaatccccttaacc 364688  T
Q  196 aataa 200  Q
    |||||    
T  364687 aataa 364683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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