View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4796_high_4 (Length: 230)
Name: NF4796_high_4
Description: NF4796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4796_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 52035952 - 52036167
Alignment:
| Q |
1 |
aatagattacattaaccattatttaaccgttttctgtgggaacaggggatgcctcaacattaggcaaggcaactactgttgttagtccgtttgagattct |
100 |
Q |
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| T |
52035952 |
aatagattacattaaccatt---taaccgttttctgtgggaacaggggatgcctcaacataaggcaaggcaactactgttgttagtctgtttgagattct |
52036048 |
T |
|
| Q |
101 |
atacagcaagtaaacaataattgcgaatgctaattaagttcacaacaacgagcaattgcatttattccatttaataagaatctctattggtgttgcacaa |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52036049 |
atacaacaagtaaacaataattgcgaatgctaattaagttcacaacaacgaccaattgcatttattccatttaataagaatctctattggtgttgcacaa |
52036148 |
T |
|
| Q |
201 |
attcactatacacaggttc |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
52036149 |
attcactatacacaggttc |
52036167 |
T |
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