View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4796_low_2 (Length: 286)
Name: NF4796_low_2
Description: NF4796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4796_low_2 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 13367008 - 13366814
Alignment:
| Q |
18 |
cctaagacataccccccgggatttgccaaagtaagggtcatgatgccattgctaatcaccacctgaaaatcatttaagagaatcagaatgatagtttttc |
117 |
Q |
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| T |
13367008 |
cctaagacatacccccctggatttgccaaagtaagggacatgatgccattgctaatcaccacctgaaaatcatttaagagaattagaataatagtttttc |
13366909 |
T |
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| Q |
118 |
cttttagatcttctttcgaataannnnnnnnaatgaactatatttgaatcgcagttcgaagtcacaactgtggctgcaaagtaacaaatttaaac |
212 |
Q |
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| T |
13366908 |
cttttagatcttctttcgaataattttttttaatgaactatatttgaatcgcagttcgaagtcacaattgtggctgcaaagtaacaaatttaaac |
13366814 |
T |
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Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 20130268 - 20130195
Alignment:
| Q |
213 |
acctcaatcacgaaccctcttcctaatcacccttgattcatgctcatcttttgctttcaactctgtaattttct |
286 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
20130268 |
acctcaatcatgaaccctcttcctaatcacccttgattcatgcccatcgtttgctttcaactctgtaattttct |
20130195 |
T |
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