View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4797-Insertion-1 (Length: 952)
Name: NF4797-Insertion-1
Description: NF4797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4797-Insertion-1 |
 | |
|
| [»] scaffold0373 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 276 - 603
Target Start/End: Original strand, 13889123 - 13889436
Alignment:
| Q |
276 |
gcactaaaatatttacgatcatcttcaatttaaaatcaaagtaaatctttttctttcgaaaatgtttccaaaaacgatgatatgaatgaaaaccgacatt |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13889123 |
gcactaaaatatttacgatcatcttcaatttaaaatcaaagtaaatctttttctttcaaaaacgtttccaaaaacgatgatatgaatgaaaaccgacatt |
13889222 |
T |
|
| Q |
376 |
ttataaatcaacttcaacaaataattgtcacaaatcatcaaccttatcacaaaaattattattattcattgacggtaaataggtaattccacgaggtcac |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||| |
|
|
| T |
13889223 |
ttataaatcaacttcaacaaataattgtcacaaatcttcaaccttatcacaaaaattattattattcattgacggtgaataggtaactccacgagatcac |
13889322 |
T |
|
| Q |
476 |
acaatccgaacactttaaagatgtccccgaaaacactctcctcaaagggcgccaacttcaatctaagttccctccaccatgaggttattatcatttgtta |
575 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13889323 |
acaatccgaacactttaaagatgtc--------------ccttaaagggcgccaacttcaatctaagttccctcctccatgaggttattatcatttgtta |
13889408 |
T |
|
| Q |
576 |
agatgttatctccatgtgagattacgag |
603 |
Q |
| |
|
|||||||||||| ||||||||||||||| |
|
|
| T |
13889409 |
agatgttatctcaatgtgagattacgag |
13889436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 7 - 233
Target Start/End: Original strand, 13888871 - 13889097
Alignment:
| Q |
7 |
agtccctggtctcctttcaatattctcatcttaccgttatcgagtgtgcatttcaatgttaggtacatggttgataaagttggcatatagcattgagaga |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13888871 |
agtccctggtctcctttcaacattctcatcttaccgttatcgagtgtgcatttcaatgttaggtacatggttgataaagttggcatatagcattgagaga |
13888970 |
T |
|
| Q |
107 |
gttggacgacctgcgatgatgttatatgatgaaaggggagcgtccaccaagctttggcatctgtctgttcctcatgagaagcccaccaagctttctgtag |
206 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13888971 |
gttggaagacctgcgatgatgttatataatgaaaggggagcgtccaccaagctttggcatcagtctgttcctcatgagaagcccaccaagctttctgtag |
13889070 |
T |
|
| Q |
207 |
cacctaaattttaacaacgaacgtgca |
233 |
Q |
| |
|
||||||||||||||||| |||| |||| |
|
|
| T |
13889071 |
cacctaaattttaacaatgaacatgca |
13889097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 603 - 883
Target Start/End: Original strand, 13889508 - 13889788
Alignment:
| Q |
603 |
gtcactaggggtggaaacaggctaacagctttgtaaggccaaagcatgacctatcnnnnnnnttaaggcttaagtctaacttgcggtctgtcatagactt |
702 |
Q |
| |
|
|||| |||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13889508 |
gtcattaggggtggaaacatgctaacggctttgtaaggcctaagcatgacctatcaaaaaaattaaggcttaagtctgacttgcggtctgtcatagactt |
13889607 |
T |
|
| Q |
703 |
aagtcttacctcttgaaagcctgatgtggcatgttatagtctatttaaaagtctatttcgtataaacatcattaaataaatagcgtgatttgagtttgaa |
802 |
Q |
| |
|
||||| |||||||||||| | ||||||||||| ||||||||||||||||||||||||| ||| |||||| | ||||||||||||||||||||||||||| |
|
|
| T |
13889608 |
gagtctaacctcttgaaagtc-gatgtggcatgctatagtctatttaaaagtctatttcatatgaacatcttcaaataaatagcgtgatttgagtttgaa |
13889706 |
T |
|
| Q |
803 |
tagactaacgaattaatccatatggccttgttttggacagcgatgggacatttgagccta--tacccatccaatccaaaatgg |
883 |
Q |
| |
|
|||||||||||| ||| ||||||| |||| |||||| ||||||| |||||||||||| || || ||||||||||||||||| |
|
|
| T |
13889707 |
tagactaacgaactaagccatatgaccttattttgggcagcgat-ggacatttgagcttagtgactcatccaatccaaaatgg |
13889788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 743 - 781
Target Start/End: Original strand, 7254 - 7292
Alignment:
| Q |
743 |
ctatttaaaagtctatttcgtataaacatcattaaataa |
781 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
7254 |
ctatttaaaagtctatttcatataaacatctttaaataa |
7292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 743 - 781
Target Start/End: Complemental strand, 6829166 - 6829128
Alignment:
| Q |
743 |
ctatttaaaagtctatttcgtataaacatcattaaataa |
781 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
6829166 |
ctatttaaaagtctatttcatataaacatctttaaataa |
6829128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University