View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4797-Insertion-2 (Length: 932)
Name: NF4797-Insertion-2
Description: NF4797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4797-Insertion-2 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
| [»] chr3 (7 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 618; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 202 - 932
Target Start/End: Original strand, 757701 - 758424
Alignment:
| Q |
202 |
tctacttacttgacccacatggaatcccttagtaataatgcatgtgggtattatgccgtagatttgtgctaagaccaaacaatatgtagaaaacaacact |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
757701 |
tctacttacttgacccacatggaatcccttagtaataatgcatgtgggtattatgccgtagatttgtgctaagaccaaacaatatgtagaaaacaacact |
757800 |
T |
|
| Q |
302 |
gaaatcaagcaaaaaccattgttgtgataggacaaataataacagtatacatggaaggcaaacaaaaacatgacttcatgtgacatatatacttacaccg |
401 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
757801 |
gaaatcaagcaaaaaccattgttgttataggacaaataataacagtatacatggaaggcaaacaaaaacatgacttcatgtgacatatatacttacaccg |
757900 |
T |
|
| Q |
402 |
tgatcccctaaaacaataaactctggaccaaatagcaataacagactcatagtatataaatcaaaatgattaaatgtttcatatgattaagtacataatg |
501 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
757901 |
tgatcccttaaaacaataaactgtggaccaaatagtaataacagactcatagtatataaatcaaaatgattaaatgtttcatatgattaagtacataatg |
758000 |
T |
|
| Q |
502 |
atataaacaaagttcaatgcaacattaatttgtcnnnnnnnnnnnnnngaagttcaatgcaatattaagacttgtttagtaactcagacttaaaaggcct |
601 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
758001 |
atataaacaaagttcaatgcaacattaatttatcaaaaaaaaaaaaa-gaagttcaatgcaatattaagacttgtttagtaactcagacttaaaaggcct |
758099 |
T |
|
| Q |
602 |
tccacaagctattaatgtagattgaaattgaatggtagggtagctaagatgtcaatttatttgaaattttacttttaaatttagggcacattttggtacc |
701 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
758100 |
tccacaagctattaatgtagattgaaattgaatggtagggtagctaagatgtcaatttatttgaaattttacttttaaatttagggcacattttggtacc |
758199 |
T |
|
| Q |
702 |
taaaattgaaatggaatcttttgtaagaaactttaattaacttgagacaacaatggtgattatggctttgaatttgatcataaaaatccacagcacagga |
801 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
758200 |
taaaattgaaatggaatcttttgtaagaaactttaattaacttgagacaacaatggtgattatggctttgaatttgatcataaaaatccacagcacagga |
758299 |
T |
|
| Q |
802 |
ggtccttgtttgctactgttctttagtatttgtcctcttccattttggttctatttatcatcatgttgtggtttctcactttgggtttccttaacaaaat |
901 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||| || ||||||||||| |
|
|
| T |
758300 |
ggtccttgtttgctactgttctttagtatttgtcctcttccattct-gttctatttatcatcatgttgt-gtttctcactttgg--tttcttaacaaaat |
758395 |
T |
|
| Q |
902 |
aaattaggggggaatgtgttgtagtatgtta |
932 |
Q |
| |
|
||||||||||| |||||||||||||||||| |
|
|
| T |
758396 |
aaattaggggg--atgtgttgtagtatgtta |
758424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 698128 - 698047
Alignment:
| Q |
8 |
aaatgaacgttagcgaacataactgataaatgttttgcactaactagaatggaaaacttgactcaactaataaattcaggga |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
698128 |
aaatgaacgttagcgaacataactgataaatgttttgcactaactagaatggaaaacttgactcaactaataaattcaggga |
698047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 766426 - 766345
Alignment:
| Q |
8 |
aaatgaacgttagcgaacataactgataaatgttttgcactaactagaatggaaaacttgactcaactaataaattcaggga |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
766426 |
aaatgaacgttagcgaacataactgataaatgttttgcactaactagaatggaaaacttgactcaactaataaattcaggga |
766345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 757586 - 757638
Alignment:
| Q |
87 |
ggacttcactagttgaaacttgtaatgagagccgaaagtatggcggggatgca |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
757586 |
ggacttcactagttgaaacttgtaatgagagccgaaagtatggcggggatgca |
757638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 598; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 202 - 932
Target Start/End: Complemental strand, 36989675 - 36988947
Alignment:
| Q |
202 |
tctacttacttgacccacatggaatcccttagtaataatgcatgtgggtattatgccgtagatttgtgctaagaccaaacaatatgtagaaaacaacact |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36989675 |
tctacttacttgacccacatggaatcccttagtaataatgcatgtgggtattatgccgtagatttgtgctaagaccaaacaatatgtagaaaacatcact |
36989576 |
T |
|
| Q |
302 |
gaaatcaagcaaaaaccattgttgtgataggacaaataataacagtatacatggaaggcaaacaaaaacatgacttcatgtgacatatatacttacaccg |
401 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36989575 |
gaaatcaagcaaaaaccattgttgttataggacaaataataacagtatacatggaaggcaaacaaaaacatgacttcatgtgacatatatacttacaccg |
36989476 |
T |
|
| Q |
402 |
tgatcccctaaaacaataaactctggaccaaatagcaataacagactcatagtatataaatcaaaatgattaaatgtttcatatgattaagtacataatg |
501 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36989475 |
tgatcccttaaaacaataaactgtggaccaaatagtaataacagactcatagtatataaatcaaaatgattaaatgtttcatatgattaagtacataatg |
36989376 |
T |
|
| Q |
502 |
atataaacaaagttcaatgcaacattaatttgtcnnnnnnnnnnnnnn----gaagttcaatgcaatattaagacttgtttagtaactcagacttaaaag |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36989375 |
atataaacaaagttcaatgcaacattaatttgtaaaaaaaaaaaaaaaaaaagaagttcaatgcaatattaagacttgtttagtaactcagacttaaaag |
36989276 |
T |
|
| Q |
598 |
gccttccacaagctattaatgtagattgaaattgaatggtagggtagctaagatgtcaatttatttgaaattttacttttaaatttagggcacattttgg |
697 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36989275 |
gccttccacaagctattaatgtagattgaaattgaatggtagggtagctaagatgtcaatttatttgaaattttacttttaaatttagggcacattttgg |
36989176 |
T |
|
| Q |
698 |
tacctaaaattgaaatggaatcttttgtaagaaactttaattaacttgagacaacaatggtgattatggctttgaatttgatcataaaaatccacagcac |
797 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36989175 |
tacctaaaattgaaatggaatcttttgtaagaaactttaattaacttgagacaacaatggtgattatggctttgaatttgatcataaaaatccacagcac |
36989076 |
T |
|
| Q |
798 |
aggaggtccttgtttgctactgttctttagtatttgtcctcttccattttggttctatttatcatcatgttgtggtttctcactttgggtttccttaaca |
897 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||| || ||||||| |
|
|
| T |
36989075 |
aggaggtccttgtttgctactgttctttagtatttgtcctcttccattct-gttctatttatcatcatgttgt-gtttctcactttgg--tttcttaaca |
36988980 |
T |
|
| Q |
898 |
aaataaattaggggggaatgtgttgtagtatgtta |
932 |
Q |
| |
|
|| ||||||| |||| |||||||||||||||||| |
|
|
| T |
36988979 |
aattaaattacgggg--atgtgttgtagtatgtta |
36988947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 202 - 932
Target Start/End: Complemental strand, 37015115 - 37014386
Alignment:
| Q |
202 |
tctacttacttgacccacatggaatcccttagtaataatgcatgtgggtattatgccgtagatttgtgctaagaccaaacaatatgtagaaaacaacact |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37015115 |
tctacttacttgacccacatggaatcccttagtaataatgcatgtgggtattatgccgtagatttgtgctaagaccaaacaatatgtagaaaacagcact |
37015016 |
T |
|
| Q |
302 |
gaaatcaagcaaaaaccattgttgtgataggacaaataataacagtataca-tggaaggcaaacaaaaacatgacttcatgtgacatatatacttacacc |
400 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37015015 |
gaaatcaagcaaaaaccattgttgttataggacaaataataacagtatacaattgaaggcaaacaaaaacatgacttcatgtgacatatatacttacacc |
37014916 |
T |
|
| Q |
401 |
gtgatcccctaaaacaataaactctggaccaaatagcaataacagactcatagtatataaatcaaaatgattaaatgtttcatatgattaagtacataat |
500 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37014915 |
gtgatcccctaaaacaataaactgtggaccaaatagtaataacagactcacagtatataaatcaaaatgattaaatgtttcatatgattaagtacataat |
37014816 |
T |
|
| Q |
501 |
gatataaacaaagttcaatgcaacattaatttgtcnnnnnnnnnnnnnn----gaagttcaatgcaatattaagacttgtttagtaactcagacttaaaa |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37014815 |
gatataaacaaagttcaatgcaacattaatttgtaaaaaaaaaaaaaaaaaaagaagttcaatgcaatattaagacttgtttagtaactcagacttaaaa |
37014716 |
T |
|
| Q |
597 |
ggccttccacaagctattaatgtagattgaaattgaatggtagggtagctaagatgtcaatttatttgaaattttacttttaaatttagggcacattttg |
696 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37014715 |
ggccttccacaagctattaatgtagattgaaattgaatggtagggtagctaagatgtcaatttatttgaaattttacttttaaatttagggcacattttg |
37014616 |
T |
|
| Q |
697 |
gtacctaaaattgaaatggaatcttttgtaagaaactttaattaacttgagacaacaatggtgattatggctttgaatttgatcataaaaatccacagca |
796 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37014615 |
gtacctaaaattgaaatggaatcttttgtaagaaactttaattaacttgagacaacaatggtgattatggctttgaatttgatcataaaaatccacagca |
37014516 |
T |
|
| Q |
797 |
caggaggtccttgtttgctactgttctttagtatttgtcctcttccattttggttctatttatcatcatgttgtggtttctcactttgggtttccttaac |
896 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||| || |||||| |
|
|
| T |
37014515 |
caggaggtccttgtttgctactgttctttagtatttgtcctcttccattct-gttctatttatcatcatgttgt-gtttctcactttgg--tttcttaac |
37014420 |
T |
|
| Q |
897 |
aaaataaattaggggggaatgtgttgtagtatgtta |
932 |
Q |
| |
|
||| ||||||| |||| |||||||||||||||||| |
|
|
| T |
37014419 |
aaattaaattacgggg--atgtgttgtagtatgtta |
37014386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 36963813 - 36963894
Alignment:
| Q |
8 |
aaatgaacgttagcgaacataactgataaatgttttgcactaactagaatggaaaacttgactcaactaataaattcaggga |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36963813 |
aaatgaacgttagcgaacataactgataaatgttttgcactaactagaatggaaaacttgactcaactaataaattcaggga |
36963894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 36989791 - 36989739
Alignment:
| Q |
87 |
ggacttcactagttgaaacttgtaatgagagccgaaagtatggcggggatgca |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36989791 |
ggacttcactagttgaaacttgtaatgagagccgaaagtatggcggggatgca |
36989739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 37015231 - 37015179
Alignment:
| Q |
87 |
ggacttcactagttgaaacttgtaatgagagccgaaagtatggcggggatgca |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37015231 |
ggacttcactagttgaaacttgtaatgagagccgaaagtatggcggggatgca |
37015179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 260 - 336
Target Start/End: Complemental strand, 39160937 - 39160861
Alignment:
| Q |
260 |
tagatttgtgctaagaccaaacaatatgtagaaaacaacactgaaatcaagcaaaaaccattgttgtgataggacaa |
336 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||| |||||||||||||||||| | ||||||||| | ||||||| |
|
|
| T |
39160937 |
tagatttgtgctaagaccaaaaaacgtgttgaaaatgacactgaaatcaagcaaacaacattgttgttacaggacaa |
39160861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 27006625 - 27006559
Alignment:
| Q |
260 |
tagatttgtgctaagaccaaacaatatgtagaaaacaacactgaaatcaagcaaaaaccattgttgt |
326 |
Q |
| |
|
|||||||||||| | |||||||||| || |||||| || ||||||||||||||| |||| |||||| |
|
|
| T |
27006625 |
tagatttgtgctgataccaaacaatgtgatgaaaacgacgctgaaatcaagcaaacaccaatgttgt |
27006559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 5e-46; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 254 - 432
Target Start/End: Original strand, 19179948 - 19180126
Alignment:
| Q |
254 |
atgccgtagatttgtgctaagaccaaacaatatgtagaaaacaacactgaaatcaagcaaaaaccattgttgtgataggacaaataataacagtatacat |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||| || ||| |||||||||||||||| | |
|
|
| T |
19179948 |
atgccgtagatttgtgctaagaccaaacaatatgttgaaaacgacgctgaaatcaagcaaaaaccattgttgttattggagaaataataacagtatagtt |
19180047 |
T |
|
| Q |
354 |
ggaaggcaaacaaaaacatgacttcatgtgacatatatacttacaccgtgatcccctaaaacaataaactctggaccaa |
432 |
Q |
| |
|
||||||||| ||||||| ||| ||||| |||||||||| ||||| ||||||| |||| || | ||||| |||||||| |
|
|
| T |
19180048 |
tgaaggcaaagaaaaacacgacctcatgcgacatatatagttacatcgtgatctcctataaaatgaaactgtggaccaa |
19180126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 686 - 779
Target Start/End: Original strand, 19180800 - 19180896
Alignment:
| Q |
686 |
ggcacattttggtacctaaaattgaaat---ggaatcttttgtaagaaactttaattaacttgagacaacaatggtgattatggctttgaatttgat |
779 |
Q |
| |
|
|||||||||||||| |||| |||||||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||||||||| |
|
|
| T |
19180800 |
ggcacattttggtaactaagattgaaatattggaagcttttgtaagaaactttaattaacttgagacaacaattgtgcttaagactttgaatttgat |
19180896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 446 - 497
Target Start/End: Original strand, 19180180 - 19180230
Alignment:
| Q |
446 |
actcatagtatataaatcaaaatgattaaatgtttcatatgattaagtacat |
497 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||| ||||||| |||||||| |
|
|
| T |
19180180 |
actcacagtatataaatcaaa-tgattaaatgtttgatatgataaagtacat |
19180230 |
T |
|
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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 260 - 313
Target Start/End: Complemental strand, 31824792 - 31824739
Alignment:
| Q |
260 |
tagatttgtgctaagaccaaacaatatgtagaaaacaacactgaaatcaagcaa |
313 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
31824792 |
tagatttgtgctaagaccaaacaacgtgttcaaaacgacactgaaatcaagcaa |
31824739 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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