View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4797-Insertion-3 (Length: 641)
Name: NF4797-Insertion-3
Description: NF4797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4797-Insertion-3 |
 | |
|
| [»] chr3 (13 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 565; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 7 - 641
Target Start/End: Complemental strand, 24615441 - 24614808
Alignment:
| Q |
7 |
aaatttgactctattaattattccttatatcttcagcccccctttctatattggaactctctgtttaccaagatcttgaagacataatctgctttccata |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24615441 |
aaatttgactctattaattattccttatatcttcagcccccctttctatattggaactctat--ttaccaagatcttgaagacataatctgctttctata |
24615344 |
T |
|
| Q |
107 |
ttatttaaaacagatgatattgtcattgttttcctcacaaaccagtatttcctctcatgattttgttatatatatttgaaatgattcatgtaatacttat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
24615343 |
ttatttaaaacagatgatattgtcattgttttcctcacagaccagtatttcctc-catgattttcttatatatatttgaaatgattcatgtaatacttgt |
24615245 |
T |
|
| Q |
207 |
taactagtcctgtaatacttgaaattagattttgatgtttaaaaacaattcaaaacttgacattcacaacataataggacagaaa---aacagcattaac |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24615244 |
taactagtcctgtaatacttgaaattagattttgatgtttaaaaacaattcaaaacttgacattcacaacataataggacagaaacataacagcattaac |
24615145 |
T |
|
| Q |
304 |
aaatccacaaaatttagcaagactgaagaataaagcaatttaataaagaagcctgcagaattggtacttaactttctatattaaactatgaaacaaacat |
403 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24615144 |
aaatccacaaaatttagtaagactgaagaataaagcaatttaataaagaagcctgcagaattggtacttaactttctatattaaactatgaaacaaacat |
24615045 |
T |
|
| Q |
404 |
caaaaagatgtgaacattagttttcgacagacaataaaatgtcacatattattacaaatttcttaaatcgagatattcttgagcaatacatgaaacccta |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24615044 |
caaaaagatgtgaacattagttttcgacagacaataaaatgttacatattaatacaaatttcttaaatcgagatattcttgagcaatacatgaaacccta |
24614945 |
T |
|
| Q |
504 |
gattgatataaacttgaaaatttcttaaaaacttccatgattccatctccacaaatttgactgcacgacttgatcataacgttggcacaagacaataact |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24614944 |
gattgatataaacttgaaaatttcttaaaaacttccatgattccatctccacaaatttgactgcacgacttgatcataacgttggcacaagacaataact |
24614845 |
T |
|
| Q |
604 |
tttcctcgggagtaccccgtacacatcttcaaatcatt |
641 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24614844 |
tttcctc-ggagtaccccgtacacatcttcaaatcatt |
24614808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 230 - 641
Target Start/End: Original strand, 24108442 - 24108859
Alignment:
| Q |
230 |
attagattttgatgttta--aaaacaattcaaaacttgacattcacaacataataggacagaaa---aacagcattaacaaatccacaaaatttagcaag |
324 |
Q |
| |
|
||||| |||||||||||| |||| |||||||||||||| ||||||| ||||||| ||| ||| ||||||||||| ||||||||| ||||||| |
|
|
| T |
24108442 |
attagtttttgatgtttataaaaaaaattcaaaacttgaaattcacatcataatacaacaaaaacataacagcattaagaaatccacacaatttag---- |
24108537 |
T |
|
| Q |
325 |
actgaagaataaagcaatttaataaagaagcctgcagaattggtacttaactttctatattaaactatgaaacaaacatcaaaaagatgtgaacat-tag |
423 |
Q |
| |
|
|| ||||| ||||||||||||||||||||| |||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
24108538 |
acagaagattaaagcaatttaataaagaagtatgcagagttggtacttaactttttatattaaatgatgaaacaaacatcaaaaagatgtgaacatatag |
24108637 |
T |
|
| Q |
424 |
ttttcgacagacaataaaatgtcacatattattacaaatttcttaaa--tcgagatattcttgagcaatacatgaaaccctagat---tgatataaactt |
518 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24108638 |
ttttcgacagacaatgaaatgtcacatattgatacgaatttcttaaacttcgagaaattcttgagcaatacatgaaaccctagattgatgatataaactt |
24108737 |
T |
|
| Q |
519 |
gaaaatttcttaaaaacttccatgattccatctccacaaatttgactgcacgacttgatcataacgttggcacaagacaataacttttcctcgggagtac |
618 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||| ||||||| | |||||||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
24108738 |
gaaaatttcttaaaaacttccatgtatccatctctacaaatttgaatgcacgaatccatcataacactggcacaagacaataacttgtcctc-agagtac |
24108836 |
T |
|
| Q |
619 |
cccgtacacatcttcaaatcatt |
641 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
24108837 |
cctgtacacatcttcaaatcatt |
24108859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 334 - 641
Target Start/End: Original strand, 24116258 - 24116566
Alignment:
| Q |
334 |
taaagcaatttaataaagaagcctgcagaattggtacttaactttctatattaaactatgaaacaaacatcaaaaagatgtgaacattagttttcgacag |
433 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||| || || ||||||||||||| || ||||||||||||| |||||||||||| | |||||||| || |
|
|
| T |
24116258 |
taaagcaatttaataatgaagcttgcagaattggtagtttacattctatattaaacgataaaacaaacatcaacaagatgtgaacaatggttttcgatag |
24116357 |
T |
|
| Q |
434 |
acaataaaatgtcacatattattacaaatttcttaaatc--gagatattcttgagcaatacatgaaaccctagattgatataaacttgaaaatttcttaa |
531 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24116358 |
acaatgaaatgtcacatattgatacaaatttcttaaattttgagaaattcttgagcaatacatgaaaccctagattgatataaacttgaaaatttcttaa |
24116457 |
T |
|
| Q |
532 |
aaacttccatgattccatctccacaaatttgactgcacgacttgatcataacgttggcacaagacaataacttttcctcgggagtaccccgtacacatct |
631 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||| || |||||||| || ||||||||| | || |||||||| ||||||||| || || |||| |
|
|
| T |
24116458 |
aaacttccatgtgtccatctccacaaatttgaatgcacgatttcatcataacattagcacaagaccacaagttttcctc-ggagtaccctgtgcatatct |
24116556 |
T |
|
| Q |
632 |
tcaaatcatt |
641 |
Q |
| |
|
|||||||||| |
|
|
| T |
24116557 |
tcaaatcatt |
24116566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 334 - 641
Target Start/End: Complemental strand, 23693671 - 23693367
Alignment:
| Q |
334 |
taaagcaatttaataaagaagcctgcagaattggtacttaactttctatattaaactatgaaacaaacatcaaaaagatgtgaacattagttttcgacag |
433 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| ||| ||||||||| | ||| || || || | ||||||||||||||||| |||| | |
|
|
| T |
23693671 |
taaagcaatttaataaagaagcc----gaacgggtacttaaatttttatattaaatcacagaacgaaaattaacaggatgtgaacattagtttccgacgg |
23693576 |
T |
|
| Q |
434 |
acaataaaatgtcacatattattacaaatttcttaaa--tcgagatattcttgagcaatacatgaaaccctagattgatataaacttgaaaatttcttaa |
531 |
Q |
| |
|
||||| |||||| ||||||| ||||||||| ||||| || ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
23693575 |
acaatgaaatgtaacatattgatacaaattttttaaacttccagaaattcttgagcaatacatgaaaccctacattgatataaacttgaaaatttcataa |
23693476 |
T |
|
| Q |
532 |
aaacttccatgattccatctccacaaatttgactgcacgacttgatcataacgttggcacaagacaataacttttcctcgggagtaccccgtacacatct |
631 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||| | |||||||| | |||||||||||||||||| ||||| |||||||||||||||||| | |
|
|
| T |
23693475 |
aaacttccatgattccctctccacaaatttgaatgcacgattccatcataacatgggcacaagacaataacttatcctc-ggagtaccccgtacacattt |
23693377 |
T |
|
| Q |
632 |
tcaaatcatt |
641 |
Q |
| |
|
|||||||||| |
|
|
| T |
23693376 |
tcaaatcatt |
23693367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 334 - 641
Target Start/End: Complemental strand, 23712111 - 23711807
Alignment:
| Q |
334 |
taaagcaatttaataaagaagcctgcagaattggtacttaactttctatattaaactatgaaacaaacatcaaaaagatgtgaacattagttttcgacag |
433 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| ||| ||||||||| | ||| || || || | ||||||||||||||||| |||| | |
|
|
| T |
23712111 |
taaagcaatttaataaagaagcc----gaacgggtacttaaatttttatattaaatcacagaacgaaaattaacaggatgtgaacattagtttccgacgg |
23712016 |
T |
|
| Q |
434 |
acaataaaatgtcacatattattacaaatttcttaaa--tcgagatattcttgagcaatacatgaaaccctagattgatataaacttgaaaatttcttaa |
531 |
Q |
| |
|
||||| |||||| ||||||| ||||||||| ||||| || ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
23712015 |
acaatgaaatgtaacatattgatacaaattttttaaacttccagaaattcttgagcaatacatgaaaccctacattgatataaacttgaaaatttcataa |
23711916 |
T |
|
| Q |
532 |
aaacttccatgattccatctccacaaatttgactgcacgacttgatcataacgttggcacaagacaataacttttcctcgggagtaccccgtacacatct |
631 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||| | |||||||| | |||||||||||||||||| ||||| |||||||||||||||||| | |
|
|
| T |
23711915 |
aaacttccatgattccctctccacaaatttgaatgcacgattccatcataacatgggcacaagacaataacttatcctc-ggagtaccccgtacacattt |
23711817 |
T |
|
| Q |
632 |
tcaaatcatt |
641 |
Q |
| |
|
|||||||||| |
|
|
| T |
23711816 |
tcaaatcatt |
23711807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 334 - 641
Target Start/End: Complemental strand, 23730567 - 23730263
Alignment:
| Q |
334 |
taaagcaatttaataaagaagcctgcagaattggtacttaactttctatattaaactatgaaacaaacatcaaaaagatgtgaacattagttttcgacag |
433 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| ||| ||||||||| | ||| || || || | ||||||||||||||||| |||| | |
|
|
| T |
23730567 |
taaagcaatttaataaagaagcc----gaacgggtacttaaatttttatattaaatcacagaacgaaaattaacaggatgtgaacattagtttccgacgg |
23730472 |
T |
|
| Q |
434 |
acaataaaatgtcacatattattacaaatttcttaaa--tcgagatattcttgagcaatacatgaaaccctagattgatataaacttgaaaatttcttaa |
531 |
Q |
| |
|
||||| |||||| ||||||| ||||||||| ||||| || ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
23730471 |
acaatgaaatgtaacatattgatacaaattttttaaacttccagaaattcttgagcaatacatgaaaccctacattgatataaacttgaaaatttcataa |
23730372 |
T |
|
| Q |
532 |
aaacttccatgattccatctccacaaatttgactgcacgacttgatcataacgttggcacaagacaataacttttcctcgggagtaccccgtacacatct |
631 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||| | |||||||| | |||||||||||||||||| ||||| |||||||||||||||||| | |
|
|
| T |
23730371 |
aaacttccatgattccctctccacaaatttgaatgcacgattccatcataacatgggcacaagacaataacttatcctc-ggagtaccccgtacacattt |
23730273 |
T |
|
| Q |
632 |
tcaaatcatt |
641 |
Q |
| |
|
|||||||||| |
|
|
| T |
23730272 |
tcaaatcatt |
23730263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 334 - 641
Target Start/End: Complemental strand, 23749022 - 23748718
Alignment:
| Q |
334 |
taaagcaatttaataaagaagcctgcagaattggtacttaactttctatattaaactatgaaacaaacatcaaaaagatgtgaacattagttttcgacag |
433 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| ||| ||||||||| | ||| || || || | ||||||||||||||||| |||| | |
|
|
| T |
23749022 |
taaagcaatttaataaagaagcc----gaacgggtacttaaatttttatattaaatcacagaacgaaaattaacaggatgtgaacattagtttccgacgg |
23748927 |
T |
|
| Q |
434 |
acaataaaatgtcacatattattacaaatttcttaaa--tcgagatattcttgagcaatacatgaaaccctagattgatataaacttgaaaatttcttaa |
531 |
Q |
| |
|
||||| |||||| ||||||| ||||||||| ||||| || ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
23748926 |
acaatgaaatgtaacatattgatacaaattttttaaacttccagaaattcttgagcaatacatgaaaccctacattgatataaacttgaaaatttcataa |
23748827 |
T |
|
| Q |
532 |
aaacttccatgattccatctccacaaatttgactgcacgacttgatcataacgttggcacaagacaataacttttcctcgggagtaccccgtacacatct |
631 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||| | |||||||| | |||||||||||||||||| ||||| |||||||||||||||||| | |
|
|
| T |
23748826 |
aaacttccatgattccctctccacaaatttgaatgcacgattccatcataacatgggcacaagacaataacttatcctc-ggagtaccccgtacacattt |
23748728 |
T |
|
| Q |
632 |
tcaaatcatt |
641 |
Q |
| |
|
|||||||||| |
|
|
| T |
23748727 |
tcaaatcatt |
23748718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 24115862 - 24116047
Alignment:
| Q |
7 |
aaatttgactctattaattattccttatatcttcagcccccctttctatattggaactctctgtttaccaagatcttgaagacataatctgctttccata |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| | ||||||||||||| || |||||||||||||| ||| |
|
|
| T |
24115862 |
aaatttgactctattaattattccttatatcttcggtgcccctttctatattgcaactctat--ttaccaagatcttaaaaacataatctgctttttata |
24115959 |
T |
|
| Q |
107 |
ttatttaaaacagat-gatattgtcattgttttcctcacaaaccagtatttcctctcatgattttgttatatatatttgaaatgattcatgt |
197 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
24115960 |
ttatttaaaacagatagatatcctcattgttttcctcacaaaccagtatttcctctcatgattttct----tatatttgaaatgattcatgt |
24116047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 478 - 641
Target Start/End: Complemental strand, 23690071 - 23689909
Alignment:
| Q |
478 |
attcttgagcaatacatgaaaccctagattgatataaacttgaaaatttcttaaaaacttccatgattccatctccacaaatttgactgcacgacttgat |
577 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||| || || |
|
|
| T |
23690071 |
attcttgagcaacacatgaaaccctacattgatataaacttgaaaatttcttaaagacttccatgattccctctccacaaatttgaatgcacgatttcat |
23689972 |
T |
|
| Q |
578 |
cataacgttggcacaagacaataacttttcctcgggagtaccccgtacacatcttcaaatcatt |
641 |
Q |
| |
|
|||||||| ||||||||||| || |||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
23689971 |
cataacgtgtgcacaagacaacaagttttcctc-agagtaccctgtacacatcttcaaatcatt |
23689909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 478 - 641
Target Start/End: Complemental strand, 24062308 - 24062146
Alignment:
| Q |
478 |
attcttgagcaatacatgaaaccctagattgatataaacttgaaaatttcttaaaaacttccatgattccatctccacaaatttgactgcacgacttgat |
577 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||| || || |
|
|
| T |
24062308 |
attcttgagcaacacatgaaaccctacattgatataaacttgaaaatttcttaaagacttccatgattccctctccacaaatttgaatgcacgatttcat |
24062209 |
T |
|
| Q |
578 |
cataacgttggcacaagacaataacttttcctcgggagtaccccgtacacatcttcaaatcatt |
641 |
Q |
| |
|
|||||||| ||||||||||| || |||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
24062208 |
cataacgtgtgcacaagacaacaagttttcctc-agagtaccctgtacacatcttcaaatcatt |
24062146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 24102197 - 24102272
Alignment:
| Q |
127 |
tgtcattgttttcctcacaaaccagtatttcctctcatgattttgt--tatatatatttgaaatgattcatgtaat |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
24102197 |
tgtcattattttcctcacaaaccagtatttcctctcatgattttcttatatatatatttgaaatgattcatgtaat |
24102272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 385
Target Start/End: Complemental strand, 23690187 - 23690136
Alignment:
| Q |
334 |
taaagcaatttaataaagaagcctgcagaattggtacttaactttctatatt |
385 |
Q |
| |
|
||||||||||||||| ||||||| || ||||||||||||||||| |||||| |
|
|
| T |
23690187 |
taaagcaatttaatacagaagccgacaaaattggtacttaactttttatatt |
23690136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 385
Target Start/End: Complemental strand, 24062424 - 24062373
Alignment:
| Q |
334 |
taaagcaatttaataaagaagcctgcagaattggtacttaactttctatatt |
385 |
Q |
| |
|
||||||||||||||| ||||||| || ||||||||||||||||| |||||| |
|
|
| T |
24062424 |
taaagcaatttaatacagaagccgacaaaattggtacttaactttttatatt |
24062373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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