View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4797-Insertion-4 (Length: 580)
Name: NF4797-Insertion-4
Description: NF4797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4797-Insertion-4 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 508; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 8 - 580
Target Start/End: Original strand, 1346990 - 1347574
Alignment:
| Q |
8 |
aatgaagcgaagaataatataacagaaaaacaagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1346990 |
aatgaagcgaagaataatataacagaaaaacaagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagt |
1347089 |
T |
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| Q |
108 |
caaaaagatcttatctcaaagaccttgaatgatatgcaagcatccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaa |
207 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1347090 |
caaaaagatcttatctcaaagaccttgaatgatttgcaagcatccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaa |
1347189 |
T |
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| Q |
208 |
gcacttcaagctccaacaaaactgacaaattagggatttgtgcaaaggaaggtagaccgcaaaactaaagagggaaaaagttcagaggtagaactaactc |
307 |
Q |
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| T |
1347190 |
gcacttcaagctccaacaaaactgacaaattagggatttgtgcaaaggaaggtagaccgcaaaactaaagagggcaaaagttcagaggtagaactaactc |
1347289 |
T |
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| Q |
308 |
aagcaatggaacaagaggtaatggctctgtgcaaaataaagcagtgtcatgaatgcaagaaatatggaca------------cagccacaaattgttcta |
395 |
Q |
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| T |
1347290 |
aagcaatggaactagaggtaatggctctgtgcaaaataaagcagtgtcatgaatgcaagaaatatggacataatatatatatcagcaacaaattgttcta |
1347389 |
T |
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| Q |
396 |
ttcaaccaacgtggttacgaaaaatgctaagcaatgcatatatcgcgtagttattaagtgcaccctagaattgttggaccattgatttgtataaggagac |
495 |
Q |
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| T |
1347390 |
ttcaagcaacgtggttacgaaaaatgctaagcaaagcatatatcgcgtagttattaagtgtaccctagaattgttggaccattgatttgtataaggagac |
1347489 |
T |
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| Q |
496 |
aaaacctatacttttcaaaccatcaaatccaatagtagcaggtatagaaaattaagaaaaaaccaagtatacatctaggaaatat |
580 |
Q |
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| T |
1347490 |
aaaacctatacttttcaaaccatcaaatccaatagtagcaggtatagaaaattaagaaaacaccaagtatatatctaggaaatat |
1347574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 153 - 265
Target Start/End: Complemental strand, 8675916 - 8675805
Alignment:
| Q |
153 |
ttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaactgacaaattagggatttgtgcaa |
252 |
Q |
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|||||||| ||||||||| ||||| |||||| ||||||||||||||| | ||| || || |||||||||||| ||||||||| ||||||||||| || |
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| T |
8675916 |
ttggagtcgcatgaaatgttaatgagtgaaagg-tcaagtgacacaatcgaacaaacatttacagctccaacaaatctgacaaataagggatttgtgtaa |
8675818 |
T |
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| Q |
253 |
aggaaggtagacc |
265 |
Q |
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| T |
8675817 |
aggaaggtagacc |
8675805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 39 - 210
Target Start/End: Complemental strand, 19807748 - 19807579
Alignment:
| Q |
39 |
aagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttatctcaaagaccttgaatg |
138 |
Q |
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|||||||| ||||||||||| |||||||| || ||| ||||||||| ||| ||||||| ||||||| ||||||||| | | || ||||| ||||| |
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| T |
19807748 |
aagtcatggagaaaattgtgctaacactaacaagctgattcaattacgcattagcagcaattgaagagtc-aaaagatctgaacacagcgacctagaatg |
19807650 |
T |
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| Q |
139 |
atatgcaagcatccttggagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagca |
210 |
Q |
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| T |
19807649 |
atttgcaatcacccttgcagtcacatgaaatgcaaataagtgaaa-agtcaagtgacacaatcgatcaagca |
19807579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 407 - 523
Target Start/End: Complemental strand, 8675798 - 8675681
Alignment:
| Q |
407 |
tggttacgaaaaatgctaagcaatgcatatatcgcgtagttattaagtgcaccctagaattgttggacc-attgatttgtataaggagacaaaacctata |
505 |
Q |
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| T |
8675798 |
tggttacagaaaatgctaagcaaaacatatattgcatagttatcaagtgcaccctagaattggaagaccgtttgatttgtataaggagaccaagcctgta |
8675699 |
T |
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| Q |
506 |
cttttcaaaccatcaaat |
523 |
Q |
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| T |
8675698 |
ttgttcaaaccgtcaaat |
8675681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 9619623 - 9619569
Alignment:
| Q |
215 |
aagctccaacaaaactgacaaattagggatttgtgcaaaggaaggtagaccgcaa |
269 |
Q |
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| T |
9619623 |
aagctccagcaaatctgacaaataagtgatttgtgcaaaggagggtagaccgcaa |
9619569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 489
Target Start/End: Complemental strand, 9619439 - 9619327
Alignment:
| Q |
377 |
acagccacaaattgttctattcaaccaacgtggttacgaaaaatgctaagcaatgcatatatcgcgtagttattaagtgcaccctagaattgttggacca |
476 |
Q |
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||||||||||||| || || |||| ||| ||||||| ||||||||||||| |||| || || ||||||||||||||||||| |||| ||||| |
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| T |
9619439 |
acagccacaaattattttactcaagcaatttggttacagaaaatgctaagcataacatacattgcacagttattaagtgcaccctataattagaagacca |
9619340 |
T |
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| Q |
477 |
ttgatttgtataa |
489 |
Q |
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| T |
9619339 |
tttatttgtataa |
9619327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 443 - 514
Target Start/End: Complemental strand, 15785176 - 15785105
Alignment:
| Q |
443 |
tagttattaagtgcaccctagaattgttggaccattgatttgtataaggagacaaaacctatacttttcaaa |
514 |
Q |
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||||||| |||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||| | |||||| |
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| T |
15785176 |
tagttatcaagtgcaccctagaattggtggaccattaattggtataaggagaccaaacctatattgttcaaa |
15785105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 40031430 - 40031340
Alignment:
| Q |
22 |
taatataacagaaaaacaagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaa |
112 |
Q |
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| T |
40031430 |
taatacaacagaaaaacaagtcatggagaagattatgcaaacactatcaagatgattcaattacgccatagcagcatctcaagagtcaaaa |
40031340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 299
Target Start/End: Original strand, 32241112 - 32241253
Alignment:
| Q |
156 |
gagtcacatgaaatgcgaatgaaagaaagggtcaagtgacacaatcaatcaagcacttcaagctccaacaaaa-ctgacaaattagggatttgtgcaaag |
254 |
Q |
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||||||||||||||| |||||| |||||| || ||||||| |||| | ||| || || ||||||| ||||| |||||| || |||||||||||||||| |
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| T |
32241112 |
gagtcacatgaaatgtgaatgagtgaaagg-tcgagtgacataatcgaccaaacatttaaagctccttcaaaatctgacagatgagggatttgtgcaaag |
32241210 |
T |
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| Q |
255 |
gaaggtagaccgcaaaactaaagagggaaaaagttcagaggtaga |
299 |
Q |
| |
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| T |
32241211 |
gatggtagacctc--aaccaaagagggcaaaactttagaggtaga |
32241253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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