View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4797-Insertion-5 (Length: 535)
Name: NF4797-Insertion-5
Description: NF4797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4797-Insertion-5 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 11 - 535
Target Start/End: Complemental strand, 30091671 - 30091148
Alignment:
| Q |
11 |
ttgatgatattccacattatgaagatgctatagcaatagcttcttttgcagctatggagaaagggattgttgtttcatcttctgcaggtaactcaggacc |
110 |
Q |
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|||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30091671 |
ttgatggtgttccactttatgaagatgctatagcaatagcttcttttgcagctatggagaaagggattgttgtttcgtcttctgcaggtaactcaggacc |
30091572 |
T |
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| Q |
111 |
taagcatggaaccttgcacaatggtatcccttgggtccttactgtagctgcaggaaccatagatagaacttttggcagccttgttttgggaaatggtgaa |
210 |
Q |
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| T |
30091571 |
taagcatggaactttgcacaatggtatcccttgggttcttactgtagctgcaggaaccatagatagaacttttggcagccttgttttggggaatggtcaa |
30091472 |
T |
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| Q |
211 |
aacattattggttggactttgtttgcatcaaatgcaactatagttgaaaatcttcctcttgtttatgataacactatatcttcatgtaattcagggaagc |
310 |
Q |
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| T |
30091471 |
aacattattggttggactttgtttgcatcaaattcaactatagtcgaaaatcttcctcttgtttacgataacactttatcttcatgcaattcagtgaagc |
30091372 |
T |
|
| Q |
311 |
ttttatctcaagttaacaagcaagtcatcattatt--tgactcaatgtcaaactcaacctcaacactgtttgatcaaatcgatgttgttgcacaaacaaa |
408 |
Q |
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| T |
30091371 |
gtttatctcaagttaacaagcaagtcataattatttgtgactcaatatcaaactcaagct---cagtgtttgatcaaatcgatgttgttacacaaaccaa |
30091275 |
T |
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| Q |
409 |
tgtgttaggggcagtgtttgtctatgatagacctgacttaattgatttaagacatatctacactccatgtattgtaatcaagacaaaagatgcagagtct |
508 |
Q |
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| T |
30091274 |
tatgttaggggcagtgtttctctctgatagtcctgaattaattgatttaagacatatctacgctccaggtattgttatcaagacaaaagatgcagaatct |
30091175 |
T |
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| Q |
509 |
gtgatcaagtatgcaaaaagcaataag |
535 |
Q |
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| T |
30091174 |
gtgatcaagtacgcaaaacgcaataag |
30091148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 11 - 534
Target Start/End: Original strand, 30099242 - 30099770
Alignment:
| Q |
11 |
ttgatgatattccacattatgaagatgctatagcaatagcttcttttgcagctatggagaaagggattgttgtttcatcttctgcaggtaactcaggacc |
110 |
Q |
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|||||||| |||||| |||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30099242 |
ttgatgatgttccactttatgaagatcctatagcaatagcttcatttgcagctatggaaaaagggattgttgtttcatcttctgcaggtaacgcaggacc |
30099341 |
T |
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| Q |
111 |
taagcatggaaccttgcacaatggtatcccttgggtccttactgtagctgcaggaaccatagatagaacttttggcagccttgttttgggaaatggtgaa |
210 |
Q |
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| T |
30099342 |
tgaattcggaaccttgcacaatggtatcccatggctccttactgcagctgcaggaacaatagatagaacttttggcactcttgttttgggaaatggtcaa |
30099441 |
T |
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| Q |
211 |
aacattattggttggactttgtttgcatcaaatgcaactatagttgaaaatcttcctcttgtttatgataacactatatcttcatgtaattcagggaagc |
310 |
Q |
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| T |
30099442 |
agcattattggttggactttgtttccagcaaatg---ctatagttgaaaatgttctacttgtttacaataacactttatcttcatgcaactcattgaact |
30099538 |
T |
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| Q |
311 |
ttttatctcaagttaacaagcaagtcatcattat-----ttgactcaatgtcaaactcaacctcaa---cactgtttgatcaaatcgatgttgttgcaca |
402 |
Q |
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| T |
30099539 |
tgttatctcaacttaacaaaaaagtgattattctctgtgatgactcattgtcaaacagaaacaaaacctcagtgtttaaccaaatcaatgttgttacaga |
30099638 |
T |
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| Q |
403 |
aacaaatgtgttaggggcagtgtttgtctatgatagacctgacttaattgatttaagacatatctacactccatgtattgtaatcaagacaaaagatgca |
502 |
Q |
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| | ||| ||||||||||||||||||||| |||||| ||| | ||||| |||||| ||| ||||||||||||| |||||||||||||| ||||||||||| |
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| T |
30099639 |
agccaatctgttaggggcagtgtttgtctctgatagtcctcagttaatcgatttaggacgtatctacactccaagtattgtaatcaagccaaaagatgca |
30099738 |
T |
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| Q |
503 |
gagtctgtgatcaagtatgcaaaaagcaataa |
534 |
Q |
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| T |
30099739 |
caatctgtgatcaattatgcaaagagcaataa |
30099770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 30087694 - 30087477
Alignment:
| Q |
8 |
gaattgatgatattccacattatgaagatgctatagcaatagcttcttttgcagctatggagaaagggattgttgtttcatcttctgcaggtaactcagg |
107 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30087694 |
gaattgatggtattccactttatgaagatgctatagcaatagcttcttttacagctatggagaaagggattgttgtttcatcttctgcaggtaactcagg |
30087595 |
T |
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| Q |
108 |
acctaagcatggaaccttgcacaatggtatcccttgggtccttactgtagctgcaggaaccatagatagaacttttggcagccttgttttgggaaatggt |
207 |
Q |
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| T |
30087594 |
acctaagcatggaaccttgcacaatggtatcccttgggtccttactgtagctgcaggaaccacagatagaacttttggcagccttgttttgggaaatggt |
30087495 |
T |
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| Q |
208 |
gaaaacattattggttgg |
225 |
Q |
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| T |
30087494 |
gaaaacattattggttgg |
30087477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 8946639 - 8946567
Alignment:
| Q |
29 |
atgaagatgctatagcaatagcttcttttgcagctatggagaaagggattgttgtttcatcttctgcaggtaa |
101 |
Q |
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|||||||| | || |||||||| ||||||||||||||||| ||||| ||| |||| || | ||| |||||||| |
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| T |
8946639 |
atgaagatccgattgcaatagcctcttttgcagctatggaaaaaggtatttttgtgtcttgttcagcaggtaa |
8946567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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