View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4797-Insertion-6 (Length: 381)

Name: NF4797-Insertion-6
Description: NF4797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4797-Insertion-6
NF4797-Insertion-6
[»] chr2 (12 HSPs)
chr2 (8-217)||(26377520-26377732)
chr2 (115-171)||(36536186-36536242)
chr2 (116-170)||(44673411-44673465)
chr2 (71-125)||(33391760-33391814)
chr2 (71-125)||(25438599-25438653)
chr2 (116-153)||(25438556-25438593)
chr2 (121-170)||(42975667-42975716)
chr2 (126-170)||(40712598-40712642)
chr2 (71-125)||(21005776-21005830)
chr2 (116-150)||(37154651-37154685)
chr2 (71-125)||(39573914-39573968)
chr2 (71-116)||(44673480-44673525)
[»] chr8 (14 HSPs)
chr8 (71-170)||(29168253-29168367)
chr8 (116-169)||(3376135-3376188)
chr8 (116-170)||(1548387-1548441)
chr8 (113-170)||(1469149-1469206)
chr8 (116-170)||(3117953-3118007)
chr8 (71-125)||(3118013-3118067)
chr8 (71-125)||(3277755-3277809)
chr8 (116-170)||(23033625-23033679)
chr8 (116-170)||(34784304-34784358)
chr8 (71-125)||(15660542-15660596)
chr8 (116-170)||(20901016-20901070)
chr8 (71-125)||(23033685-23033739)
chr8 (71-121)||(34784244-34784294)
chr8 (71-116)||(1548456-1548501)
[»] chr1 (6 HSPs)
chr1 (115-170)||(47523917-47523972)
chr1 (116-176)||(33966872-33966932)
chr1 (116-168)||(43866439-43866492)
chr1 (71-116)||(47523986-47524031)
chr1 (121-168)||(50204752-50204799)
chr1 (116-170)||(18990146-18990200)
[»] scaffold1211 (1 HSPs)
scaffold1211 (8-66)||(1297-1355)
[»] chr4 (15 HSPs)
chr4 (116-170)||(4289884-4289938)
chr4 (116-170)||(2588296-2588350)
chr4 (116-170)||(49577367-49577421)
chr4 (71-125)||(5650486-5650540)
chr4 (116-170)||(16497515-16497569)
chr4 (116-168)||(39598914-39598966)
chr4 (116-170)||(5650546-5650600)
chr4 (71-125)||(16497455-16497509)
chr4 (71-116)||(49577307-49577352)
chr4 (121-169)||(55911385-55911433)
chr4 (69-116)||(2588234-2588281)
chr4 (71-125)||(11157135-11157189)
chr4 (124-170)||(16497714-16497760)
chr4 (71-125)||(39598854-39598908)
chr4 (122-170)||(52249337-52249385)
[»] chr3 (11 HSPs)
chr3 (128-176)||(50064108-50064156)
chr3 (122-170)||(9454866-9454914)
chr3 (116-170)||(7227322-7227376)
chr3 (116-170)||(7323086-7323140)
chr3 (116-170)||(32130406-32130460)
chr3 (71-125)||(50064174-50064228)
chr3 (71-125)||(53208431-53208485)
chr3 (116-170)||(53208491-53208545)
chr3 (71-116)||(9454935-9454980)
chr3 (68-125)||(32130466-32130523)
chr3 (71-125)||(7323146-7323200)
[»] chr6 (6 HSPs)
chr6 (116-167)||(18133708-18133759)
chr6 (116-167)||(23889848-23889899)
chr6 (116-170)||(13425504-13425558)
chr6 (71-121)||(25100781-25100831)
chr6 (123-161)||(25100849-25100887)
chr6 (71-116)||(13425444-13425489)
[»] chr7 (8 HSPs)
chr7 (116-170)||(12859031-12859085)
chr7 (71-125)||(11599456-11599510)
chr7 (116-170)||(19886815-19886869)
chr7 (116-170)||(32775414-32775468)
chr7 (115-170)||(46082269-46082324)
chr7 (116-170)||(36167534-36167588)
chr7 (123-170)||(19780900-19780947)
chr7 (71-125)||(32775474-32775528)
[»] chr5 (7 HSPs)
chr5 (116-170)||(7992193-7992247)
chr5 (70-125)||(28277014-28277069)
chr5 (116-170)||(41377637-41377691)
chr5 (123-169)||(41106773-41106819)
chr5 (122-170)||(5240691-5240739)
chr5 (116-162)||(28276962-28277008)
chr5 (71-125)||(28828254-28828308)
[»] scaffold0325 (2 HSPs)
scaffold0325 (71-125)||(8650-8704)
scaffold0325 (116-168)||(8591-8643)
[»] scaffold0302 (1 HSPs)
scaffold0302 (116-170)||(17334-17388)
[»] scaffold0604 (1 HSPs)
scaffold0604 (70-125)||(453-508)
[»] scaffold0768 (1 HSPs)
scaffold0768 (121-170)||(4433-4481)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 26377732 - 26377520
Alignment:
Q  8 ctaggatgacagcttaacattggtttgaatctctagtgttgagtatggctcatacttgcgctgatgtagtcaggatcgagatcctacataggatcgatcg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||    
T  26377732 ctaggatgacagcttaacattggtttgaatctctagtgttgagtatggctcatacttgccctgatgtagtcaggatcgagatcgtacataggatcggtcg 26377633  T
Q  108 gccggtgaaggaacgtaacacggttcgtaagtaggatcggtaggt---tattgatagagttgagaggtataatatagacatataatatagagctaaatta 204  Q
    ||||||||||||||||||||||||||||||||||||| |||||||   |||||||||||||||||||||||||||| ||||| |||||||||| ||| ||    
T  26377632 gccggtgaaggaacgtaacacggttcgtaagtaggataggtaggttattattgatagagttgagaggtataatataaacatagaatatagagcaaaaata 26377533  T
Q  205 agggaaccaagca 217  Q
    |||||||||||||    
T  26377532 agggaaccaagca 26377520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 36536186 - 36536242
Alignment:
Q  115 aaggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagagg 171  Q
    |||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  36536186 aaggcacgtaacacggtttgtaagtaggatcggtaggttgttgatagagttgagagg 36536242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 44673465 - 44673411
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||| |||||||    
T  44673465 aggaacgtaacacggttcgtaagtaggatcgataggttgttgatagaattgagag 44673411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 33391760 - 33391814
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaacgtaa 125  Q
    |||||||||||||| |||||||||||||||| | ||||||||||| |||||||||    
T  33391760 atgtagtcaggatcaagatcctacataggattggtcggccggtgatggaacgtaa 33391814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 25438653 - 25438599
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaacgtaa 125  Q
    |||||||||||| |||| |||||| |||||||| |||||||||||| ||||||||    
T  25438653 atgtagtcaggaacgagttcctacgtaggatcggtcggccggtgaaagaacgtaa 25438599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 25438593 - 25438556
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggtt 153  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  25438593 aggaacgtaacacggttcgtaagtaggatcgataggtt 25438556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 42975667 - 42975716
Alignment:
Q  121 cgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||||||| ||  ||||||||||||||||||| ||||||||||||||||    
T  42975667 cgtaacacgatttataagtaggatcggtaggttgttgatagagttgagag 42975716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 40712598 - 40712642
Alignment:
Q  126 cacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    |||||| |||||||||||| |||||||| ||||||||||||||||    
T  40712598 cacggtccgtaagtaggattggtaggtttttgatagagttgagag 40712642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 21005776 - 21005830
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaacgtaa 125  Q
    |||||||||||| |||| | |||| |||| |||||||||||||||||| ||||||    
T  21005776 atgtagtcaggaacgagtttctacgtaggttcgatcggccggtgaagggacgtaa 21005830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 37154651 - 37154685
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtag 150  Q
    |||||||||||||||||||||||||||||| ||||    
T  37154651 aggaacgtaacacggttcgtaagtaggatcagtag 37154685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 39573914 - 39573968
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaacgtaa 125  Q
    |||||||||||| |||| | |||| |||| |||||||||||||||||| ||||||    
T  39573914 atgtagtcaggaacgagtttctacgtaggttcgatcggccggtgaagggacgtaa 39573968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 44673525 - 44673480
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaa 116  Q
    |||||||||||| |||| |||||| |||||||| ||||||||||||    
T  44673525 atgtagtcaggaacgagttcctacgtaggatcggtcggccggtgaa 44673480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 170
Target Start/End: Original strand, 29168253 - 29168367
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaa---------------ggaacgtaacacggttcgtaagtaggatcggtaggttat 155  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||               ||||||||||||||||||||||||||||||||||||| |    
T  29168253 atgtagtcaggatagagatcctacataggatcggtcggccggtgaaagaacgtaaacatgaggaacgtaacacggttcgtaagtaggatcggtaggttgt 29168352  T
Q  156 tgatagagttgagag 170  Q
    |||||||||||||||    
T  29168353 tgatagagttgagag 29168367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 3376135 - 3376188
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgaga 169  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3376135 aggaacgtaacacggttcgtaagtaggatcggtaggttgttgatagagttgaga 3376188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 1548441 - 1548387
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||| |||||||    
T  1548441 aggaacgtaacacggttcgtaagtaggatcgataggttgttgatagaattgagag 1548387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 1469206 - 1469149
Alignment:
Q  113 tgaaggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    |||||||||| |||||||| ||||||||||||||||||||| || |||||||||||||    
T  1469206 tgaaggaacgaaacacggtccgtaagtaggatcggtaggttgttcatagagttgagag 1469149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 3118007 - 3117953
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    |||||||||||| |||||||||||||||||| |||||| | |||||| |||||||    
T  3118007 aggaacgtaacatggttcgtaagtaggatcgataggttgtagatagaattgagag 3117953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 3118067 - 3118013
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaacgtaa 125  Q
    |||||||||||| |||| ||||||||||||| | |||||||||||| ||||||||    
T  3118067 atgtagtcaggaacgagttcctacataggattggtcggccggtgaaagaacgtaa 3118013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 3277809 - 3277755
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaacgtaa 125  Q
    |||||||||||| |||| |||||| |||||||| |||||||||||| ||||||||    
T  3277809 atgtagtcaggaacgagttcctacttaggatcggtcggccggtgaaagaacgtaa 3277755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 23033679 - 23033625
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||||||||||||||||||||||||||||| |||||| |  ||||| |||||||    
T  23033679 aggaacgtaacacggttcgtaagtaggatcgataggttgtcaatagaattgagag 23033625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 34784304 - 34784358
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||||||||||||||| ||||||||||||| |||||| | |||||| |||||||    
T  34784304 aggaacgtaacacggtttgtaagtaggatcgttaggttgtcgatagaattgagag 34784358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 15660596 - 15660542
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaacgtaa 125  Q
    |||||||||||| |||| | ||||||||| ||||| |||||||||||| ||||||    
T  15660596 atgtagtcaggaacgagtttctacataggttcgattggccggtgaagggacgtaa 15660542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 20901070 - 20901016
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    |||||||||||||||||||||||| |||||  |||||| | |||||| |||||||    
T  20901070 aggaacgtaacacggttcgtaagtgggatcaataggttgtcgatagaattgagag 20901016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 23033739 - 23033685
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaacgtaa 125  Q
    |||||||||||| |||| |||||| |||| ||| |||||||||||| ||||||||    
T  23033739 atgtagtcaggaacgagttcctacgtaggttcggtcggccggtgaaagaacgtaa 23033685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 34784244 - 34784294
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaac 121  Q
    |||||||||||| |||| |||||| |||||||| |||||||||||| ||||    
T  34784244 atgtagtcaggaacgagttcctacgtaggatcggtcggccggtgaaagaac 34784294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 1548501 - 1548456
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaa 116  Q
    |||||||||||| |||| |||||| |||||||| ||||||||||||    
T  1548501 atgtagtcaggaacgagttcctacgtaggatcggtcggccggtgaa 1548456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 115 - 170
Target Start/End: Complemental strand, 47523972 - 47523917
Alignment:
Q  115 aaggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  47523972 aaggaacgtaacacggttcgtaagtaggatcggtaggttgttgatagagttgagag 47523917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 33966932 - 33966872
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagaggtataa 176  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  33966932 aggaatgtaacacagttcgtaagtaggatcggtaggttattgatagagttgagagatataa 33966872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 43866492 - 43866439
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtag-gttattgatagagttgag 168  Q
    |||||||||||||||||||||||||||||| ||||  || ||||||||||||||    
T  43866492 aggaacgtaacacggttcgtaagtaggatcagtagcttttttgatagagttgag 43866439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 47524031 - 47523986
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaa 116  Q
    |||||||||||||||||||||||  |||||||| ||||||||||||    
T  47524031 atgtagtcaggatcgagatcctatgtaggatcggtcggccggtgaa 47523986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 50204799 - 50204752
Alignment:
Q  121 cgtaacacggttcgtaagtaggatcggtaggttattgatagagttgag 168  Q
    ||||||||| |||||||||| |||| ||||||| ||||||||||||||    
T  50204799 cgtaacacgcttcgtaagtaagatcagtaggttgttgatagagttgag 50204752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 18990146 - 18990200
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    |||||| ||||| |||| ||| || ||||||||||||| ||||||||||||||||    
T  18990146 aggaacataacatggtttgtatgttggatcggtaggttgttgatagagttgagag 18990200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1211 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold1211
Description:

Target: scaffold1211; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 1355 - 1297
Alignment:
Q  8 ctaggatgacagcttaacattggtttgaatctctagtgttgagtatggctcatacttgc 66  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  1355 ctaggatgacagcttaacattggattgaatctctagttttgagtatggctcatacttgc 1297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 4289884 - 4289938
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  4289884 aggaacgtaacccggttcgtaagtaggatcggtaggttgttgatagagttgagag 4289938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 2588296 - 2588350
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||| |||||||    
T  2588296 aggaacgtaacacggttcgtaagtaggatcgataggttgttgatagaattgagag 2588350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 49577367 - 49577421
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  49577367 aggaacgtaacacagttcataagtaggatcggtaggttgttgatagagttgagag 49577421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 5650486 - 5650540
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaacgtaa 125  Q
    |||||||||||| |||| ||||||||||||||| |||||||||||| ||||||||    
T  5650486 atgtagtcaggaacgagttcctacataggatcggtcggccggtgaaagaacgtaa 5650540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 16497515 - 16497569
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||||||||||||||||||||||||||||| |||||| | |||||| |||||||    
T  16497515 aggaacgtaacacggttcgtaagtaggatcgataggttgtcgatagaattgagag 16497569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 39598914 - 39598966
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgag 168  Q
    ||||||||| ||| |||||||||||||||||||||||| |||| |||||||||    
T  39598914 aggaacgtagcactgttcgtaagtaggatcggtaggttgttgacagagttgag 39598966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 5650546 - 5650600
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||||||||||||||||||||||||||||| |||| | | |||||| |||||||    
T  5650546 aggaacgtaacacggttcgtaagtaggatcgataggctgtcgatagaattgagag 5650600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 16497455 - 16497509
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaacgtaa 125  Q
    |||||||||||| |||| |||||| |||||||| |||||||||||| ||||||||    
T  16497455 atgtagtcaggaacgagttcctacgtaggatcggtcggccggtgaaagaacgtaa 16497509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 49577307 - 49577352
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaa 116  Q
    ||||||||| |||||||||||||| |||||||| ||||||||||||    
T  49577307 atgtagtcatgatcgagatcctacgtaggatcggtcggccggtgaa 49577352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 55911433 - 55911385
Alignment:
Q  121 cgtaacacggttcgtaagtaggatcggtaggttattgatagagttgaga 169  Q
    ||||||||| ||  ||||||||||||||||||| |||||||||||||||    
T  55911433 cgtaacacgatttataagtaggatcggtaggttgttgatagagttgaga 55911385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 2588234 - 2588281
Alignment:
Q  69 tgatgtagtcaggatcgagatcctacataggatcgatcggccggtgaa 116  Q
    |||||||||||||| |||| |||||| |||||||| ||||||||||||    
T  2588234 tgatgtagtcaggaacgagttcctacgtaggatcggtcggccggtgaa 2588281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 11157189 - 11157135
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaacgtaa 125  Q
    |||||||||||| |||| | |||| |||| |||||||||||||||||| ||||||    
T  11157189 atgtagtcaggaacgagtttctacgtaggttcgatcggccggtgaagggacgtaa 11157135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 16497714 - 16497760
Alignment:
Q  124 aacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||||||||||||||||||||| |||||| | |||||| |||||||    
T  16497714 aacacggttcgtaagtaggatcgataggttgtcgatagaattgagag 16497760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 39598854 - 39598908
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaacgtaa 125  Q
    |||||||||||||||||||||||  |||||||| |||| | ||||| ||||||||    
T  39598854 atgtagtcaggatcgagatcctatgtaggatcggtcgggcagtgaaagaacgtaa 39598908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 52249337 - 52249385
Alignment:
Q  122 gtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    |||||||||||||| |||||||||| |||||| | |||||| |||||||    
T  52249337 gtaacacggttcgtcagtaggatcgataggttgtcgatagaattgagag 52249385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 50064156 - 50064108
Alignment:
Q  128 cggttcgtaagtaggatcggtaggttattgatagagttgagaggtataa 176  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50064156 cggttcgtaagtaggatcggtaggttattgatagagttgagagatataa 50064108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 9454914 - 9454866
Alignment:
Q  122 gtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||    
T  9454914 gtaacacggttcgtaagtaggatcggtaggttgttgatagaattgagag 9454866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 7227376 - 7227322
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||| ||| |||||||||||| ||||||||||||||| ||||||||||||||||    
T  7227376 aggaatgtaccacggttcgtaattaggatcggtaggttgttgatagagttgagag 7227322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 7323140 - 7323086
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||||||||||||||||||||||||||||| |||||| | |||||| |||||||    
T  7323140 aggaacgtaacacggttcgtaagtaggatcgataggttgtcgatagaattgagag 7323086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 32130460 - 32130406
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||||||||||||||||||||||||||||| |||||| | |||||| |||||||    
T  32130460 aggaacgtaacacggttcgtaagtaggatcgataggttgtcgatagaattgagag 32130406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 50064228 - 50064174
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaacgtaa 125  Q
    |||||||||||||||||||||||| |||||||  ||||||| |||||||| ||||    
T  50064228 atgtagtcaggatcgagatcctacgtaggatcagtcggccgctgaaggaatgtaa 50064174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 53208431 - 53208485
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaacgtaa 125  Q
    |||||||||||| |||| |||||| |||||||| |||||||||||| ||||||||    
T  53208431 atgtagtcaggaacgagttcctacgtaggatcggtcggccggtgaaagaacgtaa 53208485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 53208491 - 53208545
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    |||||||||||||||||| |||||||||||| |||||| | |||||| |||||||    
T  53208491 aggaacgtaacacggttcataagtaggatcgataggttgtcgatagaattgagag 53208545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 9454980 - 9454935
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaa 116  Q
    ||||||||||||||| |||||||| |||||||| ||||||||||||    
T  9454980 atgtagtcaggatcgtgatcctacgtaggatcggtcggccggtgaa 9454935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 32130523 - 32130466
Alignment:
Q  68 ctgatgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaacgtaa 125  Q
    ||||||||||||||| |||| |||||| |||||||| ||||||| |||| ||||||||    
T  32130523 ctgatgtagtcaggaacgagttcctacgtaggatcggtcggccgatgaaagaacgtaa 32130466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 7323200 - 7323146
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaacgtaa 125  Q
    |||||||||||| | || |||||| |||||||| |||||||||||| ||||||||    
T  7323200 atgtagtcaggaacaagttcctacgtaggatcggtcggccggtgaaagaacgtaa 7323146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 18133708 - 18133759
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttga 167  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  18133708 aggaacgtaacacggttcataagtaggatcggtaggtttttgatagagttga 18133759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 23889848 - 23889899
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttga 167  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  23889848 aggaacgtaacacggttcgttagtaggatcggtaggtttttgatagagttga 23889899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 13425504 - 13425558
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||| |||||||    
T  13425504 aggaacgtaacacggttcgtaagtaggatcgataggttgttgatagaattgagag 13425558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 25100781 - 25100831
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaac 121  Q
    ||||||| |||||| |||||||||||||||| | |||||||||||||||||    
T  25100781 atgtagttaggatcaagatcctacataggattggtcggccggtgaaggaac 25100831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 25100849 - 25100887
Alignment:
Q  123 taacacggttcgtaagtaggatcggtaggttattgatag 161  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  25100849 taacacagttcgtaagtaggatcggtaggttgttgatag 25100887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 13425444 - 13425489
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaa 116  Q
    |||||||||||| |||| |||||| |||||||| ||||||||||||    
T  13425444 atgtagtcaggaacgagttcctacgtaggatcggtcggccggtgaa 13425489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 12859031 - 12859085
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||| |||||||    
T  12859031 aggaacgtaacacggttcgtaagtaggatcgataggttgttgatagaattgagag 12859085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 125
Target Start/End: Original strand, 11599456 - 11599510
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaacgtaa 125  Q
    |||||||||||||||||||||||| |||| ||| ||||||| |||||||||||||    
T  11599456 atgtagtcaggatcgagatcctacgtaggttcggtcggccgatgaaggaacgtaa 11599510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 19886869 - 19886815
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||||||||||||||||||||||||||||| |||||| | |||||| |||||||    
T  19886869 aggaacgtaacacggttcgtaagtaggatcgataggttgtcgatagaattgagag 19886815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 32775468 - 32775414
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||||||||||||||||||||||||||||| |||||| | |||||| |||||||    
T  32775468 aggaacgtaacacggttcgtaagtaggatcgataggttgtcgatagaattgagag 32775414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 46082269 - 46082324
Alignment:
Q  115 aaggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||||||||||||||||| || ||||||| | |||||| ||||||||||||||||    
T  46082269 aaggaacgtaacacggttcatatgtaggattgctaggttgttgatagagttgagag 46082324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 36167534 - 36167588
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||||||||||||||||||||||||||| | |||||| | |||||| |||||||    
T  36167534 aggaacgtaacacggttcgtaagtaggattgataggttgtcgatagaattgagag 36167588  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 19780900 - 19780947
Alignment:
Q  123 taacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||||| |||||||||||||| ||||| || ||||||||||||||||    
T  19780900 taacacgattcgtaagtaggataggtagcttgttgatagagttgagag 19780947  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 32775528 - 32775474
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaacgtaa 125  Q
    |||||||||||| |||| |||| | |||||||| |||||||||||| ||||||||    
T  32775528 atgtagtcaggaacgagttcctgcgtaggatcggtcggccggtgaaagaacgtaa 32775474  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 7992193 - 7992247
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||| |||||||    
T  7992193 aggaacgtaacacggttcgtaagtaggatcgataggttgttgatagaattgagag 7992247  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 28277069 - 28277014
Alignment:
Q  70 gatgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaacgtaa 125  Q
    |||||||||||||| |||||||||| |||||||||| |||||||||| ||||||||    
T  28277069 gatgtagtcaggattgagatcctacgtaggatcgattggccggtgaaagaacgtaa 28277014  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 41377637 - 41377691
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    |||||||||||||| || ||||||||||| |||||||| ||||||||||||||||    
T  41377637 aggaacgtaacacgatttgtaagtaggattggtaggttgttgatagagttgagag 41377691  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 41106819 - 41106773
Alignment:
Q  123 taacacggttcgtaagtaggatcggtaggttattgatagagttgaga 169  Q
    ||||||| ||||||||||||||| ||||||| |||||||||||||||    
T  41106819 taacacgattcgtaagtaggatccgtaggttgttgatagagttgaga 41106773  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 5240739 - 5240691
Alignment:
Q  122 gtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    |||||| ||||| ||||||||||| ||||||| ||||||||||||||||    
T  5240739 gtaacatggttcataagtaggatcagtaggttgttgatagagttgagag 5240691  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 28277008 - 28276962
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgataga 162  Q
    ||||||||||||| ||||||||||||||||  |||||| ||||||||    
T  28277008 aggaacgtaacacagttcgtaagtaggatcaataggttgttgataga 28276962  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 28828308 - 28828254
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaacgtaa 125  Q
    |||||||||||| |||| | |||| |||| |||||||||||||||||| ||||||    
T  28828308 atgtagtcaggaacgagtttctacgtaggttcgatcggccggtgaagggacgtaa 28828254  T

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Target: scaffold0325 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 71 - 125
Target Start/End: Complemental strand, 8704 - 8650
Alignment:
Q  71 atgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaacgtaa 125  Q
    ||||||||||||| |||||||||| |||||||| |||||||||||| ||||||||    
T  8704 atgtagtcaggatggagatcctacgtaggatcggtcggccggtgaacgaacgtaa 8650  T

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Target: scaffold0325; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 8643 - 8591
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgag 168  Q
    |||||||| |||||||| |||| |||||||| |||||| ||||||||||||||    
T  8643 aggaacgtgacacggtttgtaaataggatcgttaggtttttgatagagttgag 8591  T

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Target: scaffold0302 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 17388 - 17334
Alignment:
Q  116 aggaacgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    |||||||||||||||||||||||||||| || ||  || ||||||||||||||||    
T  17388 aggaacgtaacacggttcgtaagtaggagcgatactttgttgatagagttgagag 17334  T

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Target: scaffold0604 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 508 - 453
Alignment:
Q  70 gatgtagtcaggatcgagatcctacataggatcgatcggccggtgaaggaacgtaa 125  Q
    ||||||||||||| |||| |||||| |||| ||||| |||||||| ||||||||||    
T  508 gatgtagtcaggaacgagttcctacgtaggttcgattggccggtgtaggaacgtaa 453  T

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Target: scaffold0768 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0768
Description:

Target: scaffold0768; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 4481 - 4433
Alignment:
Q  121 cgtaacacggttcgtaagtaggatcggtaggttattgatagagttgagag 170  Q
    |||||||| ||||||||||||||||| |||| | ||||||||||||||||    
T  4481 cgtaacacagttcgtaagtaggatcgatagg-tgttgatagagttgagag 4433  T

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