View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4797-Insertion-7 (Length: 227)
Name: NF4797-Insertion-7
Description: NF4797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4797-Insertion-7 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0274 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 74 - 227
Target Start/End: Complemental strand, 33369239 - 33369086
Alignment:
| Q |
74 |
aggacaatggactgcaaaagtaacaaacaatgattatttgttggtagagaaaaagtatatacttttagaaacatttataacacagagataaaacaacatg |
173 |
Q |
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| T |
33369239 |
aggacaatggactgcaaaagtaacaaacaatgattatttgttggtagagaaaaagtatatacttttagaaacatttataacacatagataaaacaacatg |
33369140 |
T |
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| Q |
174 |
aaacttatggtcaaatatcgaccccttatttctaaaggtagcaatagcttcata |
227 |
Q |
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| T |
33369139 |
aaacttatggtcaaatattgaccccttatttctaaaggtaccaatagcttcata |
33369086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 33362213 - 33362107
Alignment:
| Q |
75 |
ggacaatggactgcaaaagtaacaaacaatgattatttgttggtagagaaaaagtatatacttttagaaacatttataacacagagataaaacaacatga |
174 |
Q |
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| T |
33362213 |
ggacaatgggctacaacagaaacaaacaaagattatttgttggtaaagaaaaa-catagactttcaaaaatatttttaaaacatagataaaataaaatgg |
33362115 |
T |
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| Q |
175 |
aacttatg |
182 |
Q |
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|||||||| |
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| T |
33362114 |
aacttatg |
33362107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 75 - 180
Target Start/End: Original strand, 13939 - 14044
Alignment:
| Q |
75 |
ggacaatggactgcaaaagtaacaaacaatgattatttgttggtagagaaaaagtatatacttttagaaacatttataacacagagataaaacaacatga |
174 |
Q |
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| T |
13939 |
ggacaatggactgcaaaagtaacaaacaatgattatttgtttgtaaagaaaaagataagaatttcagaaacaactataaaacagagttaaaataaaatga |
14038 |
T |
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| Q |
175 |
aactta |
180 |
Q |
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| T |
14039 |
aactta |
14044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 18392 - 18445
Alignment:
| Q |
75 |
ggacaatggactgcaaaagtaacaaacaatgattatttgttggtagagaaaaag |
128 |
Q |
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| T |
18392 |
ggacaatggactacaaaagtaacaaataatgattatttgtttgtaaagaaaaag |
18445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 41441044 - 41440969
Alignment:
| Q |
75 |
ggacaatggactgcaaaagtaacaaacaatgattatttgttggtagagaaaaagtatatacttttagaaacatttataa |
153 |
Q |
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| T |
41441044 |
ggacaatggactacagaagtaacaaacaatgattatttgttggtacagaaaa---atagacttttagaaacatttataa |
41440969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 75 - 181
Target Start/End: Complemental strand, 41430984 - 41430878
Alignment:
| Q |
75 |
ggacaatggactgcaaaagtaacaaacaatgattatttgttggtagagaaaaagtatatacttttagaaacatttataacacagagataaaacaacatga |
174 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| ||| |||||||| | | ||| ||||||| ||||| |||||||||||| || ||| |
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| T |
41430984 |
ggacaatggactacaaaagtaacaaacaatgattatttgtttgtaaagaaaaagataagaatttcagaaacaactataaaacagagataaaataaaatgg |
41430885 |
T |
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| Q |
175 |
aacttat |
181 |
Q |
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| T |
41430884 |
aacttat |
41430878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 41425577 - 41425526
Alignment:
| Q |
75 |
ggacaatggactgcaaaagtaacaaacaatgattatttgttggtagagaaaa |
126 |
Q |
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| T |
41425577 |
ggacaatggactacaaaagtaacaaataatgatcatttgtttgtaaagaaaa |
41425526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 119
Target Start/End: Complemental strand, 41452315 - 41452284
Alignment:
| Q |
88 |
caaaagtaacaaacaatgattatttgttggta |
119 |
Q |
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| T |
41452315 |
caaaagtaacaaacaatgattatttgttggta |
41452284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 76 - 191
Target Start/End: Original strand, 7764085 - 7764199
Alignment:
| Q |
76 |
gacaatggactgcaaaagtaacaaacaatgattatttgttggtagagaaaaagtatatacttttagaaacatttataacacagagataaaacaacatgaa |
175 |
Q |
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| T |
7764085 |
gacaacggactacaaaagtaacaaacaacgattacttgttggtaaagaaaaag-acagacttttagaaacgtttataaaacatagataaaataaaatgga |
7764183 |
T |
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| Q |
176 |
acttatggtcaaatat |
191 |
Q |
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| T |
7764184 |
ccttgtagtcaaatat |
7764199 |
T |
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