View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4797_high_2 (Length: 241)
Name: NF4797_high_2
Description: NF4797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4797_high_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 4 - 241
Target Start/End: Complemental strand, 44687601 - 44687364
Alignment:
| Q |
4 |
agagcacatcatggttgccataacattcatccatctacaaaagcttcatttttattttctttctgactcttcttccttcccttgcagtttgtttcaaaag |
103 |
Q |
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| T |
44687601 |
agagcacatcatggttgccataacattcatccatctacaaaagcttcatttttattttctttctgactcttcttccttcccttgcagtttgtttcaaaat |
44687502 |
T |
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| Q |
104 |
tgactttcaaaatcttcttatttcctccctnnnnnnnnnnnntcttcttatttccattagggctttaaacttgnnnnnnnnagcaatctacatcatatat |
203 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44687501 |
tgactttcaaaatcttcttatttcctccctaaaaaataaaaatcttcttatttccattagggctttaaacttgttttttttagcaatctacatcatatat |
44687402 |
T |
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| Q |
204 |
cgtaatttcttatgttgttattctccttcattattatt |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
44687401 |
cgtaatttcttatgttgttattctccttcattattatt |
44687364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 128
Target Start/End: Original strand, 7424013 - 7424112
Alignment:
| Q |
27 |
cattcatccatctacaaaagcttcatttttattttctttctgactcttcttccttcccttgcagtttgtttcaaaagtgactttcaaaatcttcttattt |
126 |
Q |
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|||||||||||||||| ||||||||||||| ||| |||||||| | | |||| |||| ||| |||||||||||| |||||||||||||| ||||||||| |
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| T |
7424013 |
cattcatccatctacagaagcttcattttt-tttcctttctgaatttccttctttcctttgtggtttgtttcaaaggtgactttcaaaat-ttcttattt |
7424110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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