View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4797_low_1 (Length: 435)
Name: NF4797_low_1
Description: NF4797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4797_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Complemental strand, 1346994 - 1346587
Alignment:
| Q |
18 |
tcattgaccaacgtatccattcgtaaaaaatcatgaatactttcatttttgcaaaattcaatcagctcaaattcttgttttaagccttgcaacctttttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1346994 |
tcattgaccaacgtatccattcgtaaaaaatcatgaatactttcatctttgcaaaattcaatcagctcaaattcttgttttaagccttgtaacctttttc |
1346895 |
T |
|
| Q |
118 |
gttaaattggatctgcttcatatgttttgagcatatttcccaaacttgctttgttgttatagcatggaaactcttttcaaaatctagtagctcctcgtat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1346894 |
gttaaattggatctgcttcatatgttttgagcatatttcccaaacttgctttgttgttatagcatggaaactcttttcaaaatctagtagctcctcatat |
1346795 |
T |
|
| Q |
218 |
tgacttattaaaaacaaagctttttagtttgggagtggattagcagaatctttgtttggtttgtggtgtgttgttctgctaatatatcaacctgttcgtt |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
1346794 |
tgacttattaaaaacaaagctttttagtttgggagtggattagcagaatctttgtttggtttgtggtgtgttgttctgctaatagatcaacttgttcgtt |
1346695 |
T |
|
| Q |
318 |
tgtctgctgtcaatttcatcttctgccgagggctttttgatgtcgtgtctgaccggaaatttgtgtttggccgttttaacttgcaattagcttttgttct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1346694 |
tgtctgctgtcaatttcatcttctgccgagggctttttgatgtcgtgtctgaccggaaatttgtgtttggccgttttaacttgcaattagcttttgttct |
1346595 |
T |
|
| Q |
418 |
tttctgtg |
425 |
Q |
| |
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|||||||| |
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| T |
1346594 |
tttctgtg |
1346587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 19653021 - 19652915
Alignment:
| Q |
135 |
tcatatgttttgagcata-tttcccaaacttgctttgttgttatagcatggaaactcttttcaaaatctagtagctcctcgtattgacttattaaaaaca |
233 |
Q |
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|||||||||||| ||||| ||| |||| || |||||||||||||||||||| | || |||| |||| ||| || ||| |||||||||||| |||||| |
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| T |
19653021 |
tcatatgttttgtgcataattttccaagtttcatttgttgttatagcatggaattttttctcaagatctggtatctgctcatattgacttatttaaaaca |
19652922 |
T |
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| Q |
234 |
aagcttt |
240 |
Q |
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||||||| |
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| T |
19652921 |
aagcttt |
19652915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 134
Target Start/End: Original strand, 19807813 - 19807927
Alignment:
| Q |
23 |
gaccaacgtatccattcgtaaaaaatcatga---atactttcatttttgcaaaattcaatcagctcaaattcttgttttaagccttgcaacctttttcgt |
119 |
Q |
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||||||| | ||||||||| |||||| |||| |||||||||| |||| || |||||||| |||||||| | ||||||||| |||||||| | ||| |
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| T |
19807813 |
gaccaacttgtccattcgtgaaaaataatgacaaatactttcatctttgaaatgttcaatcaactcaaattgtctttttaagccacgcaaccttgtccgt |
19807912 |
T |
|
| Q |
120 |
taaattggatctgct |
134 |
Q |
| |
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|| ||||||||||| |
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| T |
19807913 |
tatgttggatctgct |
19807927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 20 - 184
Target Start/End: Original strand, 40036795 - 40036960
Alignment:
| Q |
20 |
attgaccaacgtatccattcgtaaaaaatcatgaatactttcatttttgcaaaattcaatcagctcaaattcttgttttaagccttgcaacctttttcgt |
119 |
Q |
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|
|||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
40036795 |
attgaccaacatatccattcgtaaaaaatcatgaatgctttcatctttgtaaaattcaatcagctcaaattgttgttttaagtcttgcaacctttttcgt |
40036894 |
T |
|
| Q |
120 |
taaattggatctgcttcatatgttttgagcat-atttcccaaacttgctttgttgttatagcatgg |
184 |
Q |
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|||||||||| |||| ||| |||||||||||| ||||||||| |||| ||| |||||||||||||| |
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| T |
40036895 |
taaattggatttgctccatgtgttttgagcataatttcccaagcttgttttattgttatagcatgg |
40036960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 40031451 - 40031623
Alignment:
| Q |
20 |
attgaccaacgtatccattcgtaaaaaatcatgaatactttcatttttgcaaaattcaatcagctcaaattcttgttttaagccttgcaacctttttcgt |
119 |
Q |
| |
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||||||||| ||||| ||| ||||||||||| ||||| ||| || |||| |||||||||| |||||||||| |||||||||| ||||||||||||||| | |
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| T |
40031451 |
attgaccaatgtatctatttgtaaaaaatcaggaatatttttatctttgtaaaattcaataagctcaaattgttgttttaagtcttgcaacctttttctt |
40031550 |
T |
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| Q |
120 |
taaattggatctgcttcatatgttttgagcat-atttcccaaacttgctttgttgt--tatagcatggaaact |
189 |
Q |
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|||| ||||| |||| ||| |||||||||||| ||||||||| ||||||||| | | ||||||||||||||| |
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| T |
40031551 |
taaactggatttgctccatgtgttttgagcataatttcccaagcttgctttgctattatatagcatggaaact |
40031623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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