View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4798-Insertion-5 (Length: 743)
Name: NF4798-Insertion-5
Description: NF4798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4798-Insertion-5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 699; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 8 - 743
Target Start/End: Original strand, 30784785 - 30785519
Alignment:
| Q |
8 |
tattttgggtttatgtattggcataagtgcttgaagaactgtttgggagaaaatattataagagcttttgagctcccataagctcccctataaagcttat |
107 |
Q |
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| T |
30784785 |
tattttgggtttatgtattggcataagtgcttgaagaactgtttgggagaaaatattataagagcttttgagctcccataagctcccctataaagct-at |
30784883 |
T |
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| Q |
108 |
gaatttggacacggatcttatgcaaaaaacagaaactgcttatccagcataagtgatcatgcgataagctcttatgtcatgatcgcttaaataagttatt |
207 |
Q |
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| T |
30784884 |
gaatttggacacggatcttatgcaaaaaacagaaactgcttatccagcataagtgatcatgcgataagctcttatgtcatgatcgcttaaataagttatt |
30784983 |
T |
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| Q |
208 |
tatccaaacagnnnnnnntagtttgacatttatgcaacttcttaaacaatataagactatgcaagctctcacaaaatatttctcttcctaactcttgatt |
307 |
Q |
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| T |
30784984 |
tatccaaacagccccccctagtttgacatttatgcaacttcttaaacaatataagactatgcaagctctcacaaaatatttctcttcctaactcttgatt |
30785083 |
T |
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| Q |
308 |
gatgcaaaattgttgaatgaaccgtgattggcaggtactgtgcctgctaagcttctcttgcagttaaaaacagtcttacaaaaaggtggtttacgcaata |
407 |
Q |
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| T |
30785084 |
gatccaaaattgttgaatgaaccgtgattggcaggtactgtgcctgctaagcttctcttgcagttaaaaacagtcttacaaaaaggtggtttacgcaata |
30785183 |
T |
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| Q |
408 |
gaaatggaacattcttctacaaggatcatctccgtaaaagtaaagttcctgttttagcaattgctggtgacaaagacttaatatgccccccagaagctgt |
507 |
Q |
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| T |
30785184 |
gaaatggaacattcttctacaaggatcatctccgcaaaagtaaagttcctgttttagcaattgctggtgacaaagacttaatatgccccccagaagctgt |
30785283 |
T |
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| Q |
508 |
atatggtattaaaacttaactacctaattcgttaaacgcttaactctcccttttctctataaaacaaaaatagtttcttttctatgatgagcttaacatg |
607 |
Q |
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| T |
30785284 |
atatggtattaaaacttaactacctaattcgttaaacgcttaactctcccttttctctataaaacaaaaatagtttcttttctatgatgagcttaacatg |
30785383 |
T |
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| Q |
608 |
ttcatatatgttatgcagaaacggtgaagcttattcctaaggaactggtcacatacaaagtctttggggagtttggaggtccacactatgcccattacga |
707 |
Q |
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| T |
30785384 |
ttcatatatgttatgcagaaacggtgaagcttattcctaaggaactggtcacatacaaagtctttggggagtttggaggtccacactatgcccattacga |
30785483 |
T |
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| Q |
708 |
cctagtgggtggtcgatcggtacgattttctgatta |
743 |
Q |
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| T |
30785484 |
cctagtgggtggtcgatcggtacgattttctgatta |
30785519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 16052548 - 16052462
Alignment:
| Q |
31 |
taagtgcttgaagaactgtttgggagaaaatattataagagcttttgagctcccataagctcccctataaagcttatgaatttggac |
117 |
Q |
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| T |
16052548 |
taagtgtttgaggaactgtctggaagagaatattgcaagagcttatgagctcccataatctcccctaacaagcttatgaatttggac |
16052462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 36832241 - 36832323
Alignment:
| Q |
29 |
cataagtgcttgaagaactgtttgggagaaaatattataagagcttttgagctcccataagctcccctataaagcttatgaatt |
112 |
Q |
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| T |
36832241 |
cataagtgcttatggaactgtctgggagaaaatatcataagag-ttatgagctcccataagctccactaacaagcttatgaatt |
36832323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 91
Target Start/End: Original strand, 24023978 - 24024021
Alignment:
| Q |
48 |
gtttgggagaaaatattataagagcttttgagctcccataagct |
91 |
Q |
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| T |
24023978 |
gtttgggagaaaatattgtaagagcttatgagctcccataagct |
24024021 |
T |
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