View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4798-Insertion-6 (Length: 683)
Name: NF4798-Insertion-6
Description: NF4798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4798-Insertion-6 |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 8e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 8296702 - 8296504
Alignment:
| Q |
7 |
aaaattctcttcaccatctccctagtcgtgtgattcgtgttcttggtnnnnnnntatttctgat---ttctgtaaatttattgtcttccatgaggcccct |
103 |
Q |
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| T |
8296702 |
aaaattctcttcaccatctccctagtcgtgtgattcgtgttcttggtaaaaaa-tatttctgatcatttatgtaaatttattgtcttccctgaggcccct |
8296604 |
T |
|
| Q |
104 |
tcatattttataagagcttctaatatagtttgtgctcctttttcattttccctaaaaattaggaaacagttgtcagcacattataagtgtgtcaggagtg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| ||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
8296603 |
tcatattttataagagcttctaatatagtttgtgcttctttttcattttccccacaaaataggaaacagttgtcagcatattataagtgtgtaaggagtg |
8296504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 301 - 580
Target Start/End: Original strand, 15163048 - 15163325
Alignment:
| Q |
301 |
gtcgtaagcctttaccaggatccctgtaaaccaataccatcaccatttacaagcacttgatatttcacattagccatacaaattcccattcatttcaccc |
400 |
Q |
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| T |
15163048 |
gtcgtaagcctcttccaggatct-tataaaccaataccatcaccatttacaaacacttgatattttacattatccatacaaattcccattcatgtcaccc |
15163146 |
T |
|
| Q |
401 |
acttctcatcaaaacccatctttctcattgtatcttggacaaacctccagtttactcggtcatatgttttaccaatatctatgttcagtgctacttcccc |
500 |
Q |
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| T |
15163147 |
atttctcatcgaacctcatcttcctcctcataccttggagaaaattcaaatttactctgtcatatg-cttgctagtatctatcttcgacgctgcttcccc |
15163245 |
T |
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| Q |
501 |
tttcttccctttggatttgcatttcatgtgatgtaaaatcttagatgccaccaaaacattatccataattgatctatttt |
580 |
Q |
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| T |
15163246 |
cttcttccctttggacttgcacttcatgtgatgtaaaattttagacgccaccaaaacattatccaaaatagatatatttt |
15163325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 304 - 532
Target Start/End: Original strand, 22408967 - 22409188
Alignment:
| Q |
304 |
gtaagcctttaccaggatccctgtaaaccaataccatcaccatttacaagcacttgatatttcacattagccatacaaattcccattcatttcacccact |
403 |
Q |
| |
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|||||||| ||||| |||| |||||||||||||||||||| ||||||| || |||||| |||||| ||||| |||||||| ||||||||||| | |
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| T |
22408967 |
gtaagcctctaccaagatct-tgtaaaccaataccatcaccgtttacaaacatttgata------attagctatacacattcccatccatttcacccatt |
22409059 |
T |
|
| Q |
404 |
tctcatcaaaacccatctttctcattgtatcttggacaaacctccagtttactcggtcatatgttttaccaatatctatgttcagtgctacttccccttt |
503 |
Q |
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|||| || || |||||||| ||||| || || |||||| | | | ||||||| |||||||| ||||| ||||| || || |||| | |||||| | |
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| T |
22409060 |
tctcgtcgaaccccatcttcctcatcatacctcggacaatacactaatttactctgtcatatgctttactgatatcaatcttaagtgtgatttcccccct |
22409159 |
T |
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| Q |
504 |
cttccctttggatttgcatttcatgtgat |
532 |
Q |
| |
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||||||||||| || || |||||||||| |
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| T |
22409160 |
tttccctttggacttacacttcatgtgat |
22409188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 6e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 325 - 535
Target Start/End: Complemental strand, 14343568 - 14343358
Alignment:
| Q |
325 |
tgtaaaccaataccatcaccatttacaagcacttgatatttcacattagccatacaaattcccattcatttcacccacttctcatcaaaacccatctttc |
424 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||| | |
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| T |
14343568 |
tgtaaaccaataccatcattgtttacaagcacttgatacttcacattagccatacaaatttccatccatttcacccacttctcatcgaaccccatcttcc |
14343469 |
T |
|
| Q |
425 |
tcattgtatcttggacaaacctccagtttactcggtcatatgttttaccaatatctatgttcagtgctacttcccctttcttccctttggatttgcattt |
524 |
Q |
| |
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|||| || |||| ||||| | ||||||||||| ||||||| || | ||||| || | |||||| | |||| | ||||||||||| || || ||||| |
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| T |
14343468 |
tcatcataccttgaacaaaacaccagtttactctatcatatgcttgattgatatcaatttccagtgcaatttcctccttcttcccttttgacttacattt |
14343369 |
T |
|
| Q |
525 |
catgtgatgta |
535 |
Q |
| |
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||||||||||| |
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| T |
14343368 |
catgtgatgta |
14343358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 9e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 393 - 580
Target Start/End: Complemental strand, 42898573 - 42898387
Alignment:
| Q |
393 |
tttcacccacttctcatcaaaacccatctttctcattgtatcttggacaaacctccagtttactcggtcatatgttttaccaatatctatgttcagtgct |
492 |
Q |
| |
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||||||||| ||||| |||||| ||||||| ||||| || ||||||||| ||||||||||||| ||||||| ||| ||||||||| ||||||||| |
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| T |
42898573 |
tttcacccatttctcgtcaaaatccatcttcctcatcatacattggacaaaactccagtttactcaatcatatgctttgttaatatctatcttcagtgct |
42898474 |
T |
|
| Q |
493 |
acttcccctttcttccctttggatttgcatttcatgtgatgtaaaatcttagatgccaccaaaacattatccataattgatctatttt |
580 |
Q |
| |
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|||||||| ||||| | ||||||||||| |||||||||||||||||| | |||||| ||||||| |||||| | ||| |||||||||| |
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| T |
42898473 |
acttcccccttcttacatttggatttgcgtttcatgtgatgtaaaatttcagatgctaccaaaa-attatcaagaatagatctatttt |
42898387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 368 - 581
Target Start/End: Original strand, 40732284 - 40732499
Alignment:
| Q |
368 |
cattagccatacaaattcccattcatttcacccacttctcatcaaaacccatctttctcattgtatcttggacaaacctccagtttactcggtcatatgt |
467 |
Q |
| |
|
|||||||||||||||||| ||| | ||||| | ||||||||||| ||||||||||||| || |||||||||| ||| ||||| ||| ||||||| |
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| T |
40732284 |
cattagccatacaaattctcatatacttcactaatttctcatcaaactccatctttctcatcataccttggacaaaactctagttttctctatcatatga |
40732383 |
T |
|
| Q |
468 |
tttaccaatatctatgttcagtgctacttcccc--tttcttccctttggatttgcatttcatgtgatgtaaaatcttagatgccaccaaaacattatcca |
565 |
Q |
| |
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||| | ||||| ||| ||||||| | ||||||| ||| || ||||| ||||| ||||||||||||||||| | | | | || ||||||||||||| |
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| T |
40732384 |
tttgctaatatttatcttcagtgttgcttcccccttttttttttcttggacttgcacttcatgtgatgtaaaatttcaaacactactaaaacattatcca |
40732483 |
T |
|
| Q |
566 |
taattgatctattttt |
581 |
Q |
| |
|
|| ||||||||||| |
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|
| T |
40732484 |
agatagatctattttt |
40732499 |
T |
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