View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4798-Insertion-7 (Length: 465)
Name: NF4798-Insertion-7
Description: NF4798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4798-Insertion-7 |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 8 - 460
Target Start/End: Original strand, 20390478 - 20390930
Alignment:
| Q |
8 |
acctgcacttcaaagcatccctgaagttgattgaagttgatgaagattagtattgaccagttgggtcaatcttgctttttgctctttgnnnnnnnnnnnn |
107 |
Q |
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| T |
20390478 |
acctgcacttcaaagcatccctgaagttgattgaagttgatgaagattagtattgaccagttgggtcaatcttgctttttgctctttgaaaaaaaaatat |
20390577 |
T |
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| Q |
108 |
nttcatgattcaagatggggtatttgnnnnnnntactgtccatttgaggtggtttatgacattcctgacattcggcttattctagtactcatcaataaca |
207 |
Q |
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| T |
20390578 |
attcatgattcaagatggggtatttgaaaaaaatactgtccatttgaggtggtttatgacattcgtgacattcggcttattctagtactcatcaataaca |
20390677 |
T |
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| Q |
208 |
cgcctatgccaaatcgagtgaaaaggaaattgccaacatatcgaaggtcgtagaccagataaagctattgtggtggtcatggtttatttgtggagaagga |
307 |
Q |
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| T |
20390678 |
cgcctatgccaaatcgagtgaaaaggaaattgccaacatatcgatggtcgtaaaccagataaagctattgtggtggtcatggtttatttgtggagaagga |
20390777 |
T |
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| Q |
308 |
agaaataagaatctctattttttcaaattggtggatttgttggaatttttggcatggttggtgcttttatcttgtatcaaatggtgttgaatttaaaagg |
407 |
Q |
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| T |
20390778 |
agaaataagaatctctattttttcaaattggtggatttgttggaatttttggcatggttggtgcttttatcttgtatcaaatggtgttgaatttaaaagg |
20390877 |
T |
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| Q |
408 |
agtgtcttgaactgcagttgcatcaagtgttgcaggatttgatgatttgatca |
460 |
Q |
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| T |
20390878 |
agtgtcttgaactgcagttgcatcaagtgttgcaggatttgatgatttgatca |
20390930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 144 - 342
Target Start/End: Original strand, 20399711 - 20399908
Alignment:
| Q |
144 |
tgtccatttgaggtggtttatgacattcctgacattcggcttattctagtactcatcaataacacgcctatgccaaatcgagtgaaaaggaaattgccaa |
243 |
Q |
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| T |
20399711 |
tgtccatatgaggtggtttatgacattcgtctccttcggcttattctagcactcatcaatagcgcgcctatcccaaatagagagaaaatgaagttgccaa |
20399810 |
T |
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| Q |
244 |
catatcgaaggtcgtagaccagataaagctattgtggtggtcatggtttatttgtggagaaggaagaaataagaatctctattttttcaaattggtgga |
342 |
Q |
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| T |
20399811 |
cattttggaggtcatagagaagataaagctattgttctggtcatggtttatatgcggggaaggaagaaataagaatctcta-tttttcaaattggtgga |
20399908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 20399611 - 20399663
Alignment:
| Q |
39 |
tgaagttgatgaagattagtattgaccagttgggtcaatcttgctttttgctc |
91 |
Q |
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| T |
20399611 |
tgaagttgatgaggctgagtattgaccaatagggtcaatcatgctttttgctc |
20399663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 20413533 - 20413581
Alignment:
| Q |
39 |
tgaagttgatgaagattagtattgaccagttgggtcaatcttgcttttt |
87 |
Q |
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| T |
20413533 |
tgaagttgatgaagataagtattggcttattgggtcaatcttgcttttt |
20413581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 342
Target Start/End: Complemental strand, 23312542 - 23312435
Alignment:
| Q |
234 |
aaattgccaacatatcgaaggtcgtagaccagataaagctattgtggtggtcatggtttatttgtggagaaggaagaaataagaatctctattttttcaa |
333 |
Q |
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| T |
23312542 |
aaattgtcaacatttcaaaagttgtagatcggataaaacgattgtcatggtcatggtttatttttgggaaaagaagaaataagaatcttta-tttttcaa |
23312444 |
T |
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| Q |
334 |
attggtgga |
342 |
Q |
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| T |
23312443 |
atttgtgga |
23312435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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