View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4798-Insertion-8 (Length: 332)

Name: NF4798-Insertion-8
Description: NF4798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4798-Insertion-8
NF4798-Insertion-8
[»] chr1 (1 HSPs)
chr1 (7-332)||(51485671-51485997)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 7 - 332
Target Start/End: Original strand, 51485671 - 51485997
Alignment:
Q  7 aaaatctacatacatgcatggttcgaatttccttgttttcctagaaatttattaagactacaaattttctctaggaatgtgattcctaaattttagtaca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51485671 aaaatctacatacatgcatggttcgaatttccttgttttcctagaaatttattaagattacaaattttctctaggaatgtgattcctaaattttagtaca 51485770  T
Q  107 atatttgtatgtttttctagtcaactctgctgatatatttcatcctcgtagccacataagcttgaatcagtatggttatcattt-acgtattgagcacat 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  51485771 atatttgtatgtttttctagtcaactctgctgatatatttcatcctcgtagccacataagcttgaatcagtatggttatcatttaacgtattgagcatat 51485870  T
Q  206 gtcagnnnnnnnnnaaatattaaatgcaatgacnnnnnnnatacaatatcagcatgatgggttgaacatattatttcttgcaaattgttgaggccattta 305  Q
    |||||         |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51485871 gtcagtttttttaaaaatattaaatgcaatgactttttttatacaatatcagcatgatgggttgaacatattatttcttgcaaattgttgaggccattta 51485970  T
Q  306 tcacttgcacactttttatgtcccgat 332  Q
    |||||||||||||||||||||||||||    
T  51485971 tcacttgcacactttttatgtcccgat 51485997  T

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