View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4798_high_4 (Length: 381)
Name: NF4798_high_4
Description: NF4798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4798_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 5 - 360
Target Start/End: Original strand, 3055756 - 3056111
Alignment:
| Q |
5 |
agatgaactaagtaaaaacagaaatgatctctatgagtttgagactttgactgacattgattggcctatgtcagattctgtgcttcaaaagccttttact |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3055756 |
agatgaactaagtaaaaacagaaatgatctctatgagtttgagactttgactgacattgattggcctatgtcagattctgtgcttcaaaagccttttact |
3055855 |
T |
|
| Q |
105 |
gaagatcaatgtatgaaagcttgtatggaagattgcttttgttctgtggctattttcaggttaggtgatagttgctggaaaaagaagttaccactctcaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3055856 |
gaagatcaatgtatgaaagcttgtatggaagattgcttttgttctgtggctattttcaggttaggtgatagttgctggaaaaagaagttaccactctcaa |
3055955 |
T |
|
| Q |
205 |
atgggaaatatgatccaactcttgatggtgctaaggcctttttgaaagttagaatacataatacctccattgctatctttcctccaaattcaaattcaac |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3055956 |
atgggaaatatgatccaactcttgatggtgctaaggcctttttgaaagttagaatacataatacctccattgctatctttcctccaaattcaaattcaac |
3056055 |
T |
|
| Q |
305 |
aattgtgaacaagatcaataatagagaaacttgggttttggttggttctgtgcttt |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3056056 |
aattgtgaacaagatcaataatagagaaacttgggttttggttggttctgtgcttt |
3056111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 258
Target Start/End: Original strand, 3042936 - 3043189
Alignment:
| Q |
5 |
agatgaactaagtaaaaacagaaatgatctctatgagtttgagactttgactgacattgattggcctatgtcagattctgtgcttcaaaagccttttact |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3042936 |
agatgaactaagtaaaaacagaaatgatctctatgagtttgagactttgattgacgttgattggtctatgtcagattctgtgcttcaaaagccttttact |
3043035 |
T |
|
| Q |
105 |
gaagatcaatgtatgaaagcttgtatggaagattgcttttgttctgtggctattttcaggttaggtgatagttgctggaaaaagaagttaccactctcaa |
204 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3043036 |
gaagatcaatgtatgaaagtttgtatggaagattgctattgttctgtggctattttcaggttaggtgatagttgctggaaaaagaagttaccactctcaa |
3043135 |
T |
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| Q |
205 |
atgggaaatatgatccaactcttgatggtgctaaggcctttttgaaagttagaa |
258 |
Q |
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||||||||||||||||||||||| |||||||||||||||| || ||||| |||| |
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| T |
3043136 |
atgggaaatatgatccaactcttaatggtgctaaggccttcttcaaagtgagaa |
3043189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 25125338 - 25125085
Alignment:
| Q |
5 |
agatgaactaagtaaaaacagaaatgatctctatgagtttgagactttgactgacattgattggcctatgtcagattctgtgcttcaaaagccttttact |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25125338 |
agatgaactaagtaaaaacagaaatgatctctatgagtttgagactttgattgccgttgattggtctatgtcagattctgtgcttcaaaagccttttact |
25125239 |
T |
|
| Q |
105 |
gaagatcaatgtatgaaagcttgtatggaagattgcttttgttctgtggctattttcaggttaggtgatagttgctggaaaaagaagttaccactctcaa |
204 |
Q |
| |
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||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25125238 |
gaagaacaatgtatgaaagagtgtatggaagattgcttctgttctgtggctattttcaggttaggtgatagttgttggaaaaagaagttaccactctcaa |
25125139 |
T |
|
| Q |
205 |
atgggaaatatgatccaactcttgatggtgctaaggcctttttgaaagttagaa |
258 |
Q |
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|||||||||||||||||| |||| |||||||||||||||| || ||||| |||| |
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|
| T |
25125138 |
atgggaaatatgatccaaatcttaatggtgctaaggccttcttcaaagtgagaa |
25125085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 5 - 272
Target Start/End: Complemental strand, 3063535 - 3063268
Alignment:
| Q |
5 |
agatgaactaagtaaaaacagaaatgatctctatgagtttgagactttgactgacattgattggcctatgtcagattctgtgcttcaaaagccttttact |
104 |
Q |
| |
|
|||||| | ||||||||| ||||||||||||||||||||||||| ||||| ||||| |||||||||| | ||||||| ||||||||||| |||||||||| |
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| T |
3063535 |
agatgatccaagtaaaaagagaaatgatctctatgagtttgagattttgattgacactgattggcctctatcagattatgtgcttcaaaggccttttact |
3063436 |
T |
|
| Q |
105 |
gaagatcaatgtatgaaagcttgtatggaagattgcttttgttctgtggctattttcaggttaggtgatagttgctggaaaaagaagttaccactctcaa |
204 |
Q |
| |
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||||| || |||| |||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||| |
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| T |
3063435 |
gaagaacagtgtaggaaatcttgtatggatgattgcttgtgttctgtggctattttcaggttaggtgatagttgttggaagaagaagttaccactttcaa |
3063336 |
T |
|
| Q |
205 |
atgggaaatatgatccaactcttgatggtgctaaggcctttttgaaagttagaatacataatacctcc |
272 |
Q |
| |
|
|||||| | |||| |||||||| ||||||||||||| || |||||||| |||| | ||||| ||||| |
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|
| T |
3063335 |
atgggagagttgatgcaactcttaatggtgctaaggctttcttgaaagtgagaaaagataatgcctcc |
3063268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 5 - 360
Target Start/End: Original strand, 3034894 - 3035237
Alignment:
| Q |
5 |
agatgaactaagtaaaaacagaaatgatctctatgagtttgagactttgactgacattgattggcctatgtcagattctgtgcttcaaaagccttttact |
104 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| | |
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| T |
3034894 |
agatgaaccaagtaaaaacagaaatgatctctatgagtttgagactatgactgacattgattggccttactcagattttgtgcttcaaaagccttttaat |
3034993 |
T |
|
| Q |
105 |
gaagatcaatgtatgaaagcttgtatggaagattgcttttgttctgtggctattttcaggttaggtgatagttgctggaaaaagaagttaccactctcaa |
204 |
Q |
| |
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||| | ||||||| | || ||||||||||||||||| | |||| ||||||||||||||||| ||||||||||| ||||| |||| ||||||||| |||| |
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| T |
3034994 |
gaaaaacaatgtaaggaatcttgtatggaagattgcatgtgttatgtggctattttcaggtacggtgatagttgttggaagaagaggttaccactttcaa |
3035093 |
T |
|
| Q |
205 |
atgggaaatatgatccaactcttgatggtgctaaggcctttttgaaagttagaatacataatacctccattgctatctttcctccaaattcaaattcaac |
304 |
Q |
| |
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|||||| | |||| |||||||| ||| ||||||||| || |||||||| |||| | ||||||| ||| ||| |||||| |||| |||| |
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|
| T |
3035094 |
atgggagagttgatgcaactcttaatgatgctaaggctttcttgaaagtgagaaaagataatacatcccttg------ttcctc------taaatccaac |
3035181 |
T |
|
| Q |
305 |
aattgtgaacaagatcaataatagagaaacttgggttttggttggttctgtgcttt |
360 |
Q |
| |
|
||||||||||||| |||||||| ||||| | |||||||| |||||||||||||| |
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|
| T |
3035182 |
cattgtgaacaagactaataatagggaaacgttggttttggctggttctgtgcttt |
3035237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 30 - 206
Target Start/End: Complemental strand, 3071188 - 3071012
Alignment:
| Q |
30 |
gatctctatgagtttgagactttgactgacattgattggcctatgtcagattctgtgcttcaaaagccttttactgaagatcaatgtatgaaagcttgta |
129 |
Q |
| |
|
||||| ||||||||| || ||||| ||||| |||||||||| | |||||| | ||||||| || || |||||| || || ||||||| ||||||| ||| |
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|
| T |
3071188 |
gatctatatgagtttcaggttttgaatgacactgattggcctctatcagatgccgtgcttctaacgcgttttacagatgaacaatgtaggaaagctagta |
3071089 |
T |
|
| Q |
130 |
tggaagattgcttttgttctgtggctattttcaggttaggtgatagttgctggaaaaagaagttaccactctcaaat |
206 |
Q |
| |
|
||||||||||| | |||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
3071088 |
tggaagattgcatgtgttctgtggctatttggaggttaggtgatagttgttggaagaagaagttaccactctcaaat |
3071012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 75 - 258
Target Start/End: Original strand, 3040794 - 3040977
Alignment:
| Q |
75 |
tcagattctgtgcttcaaaagccttttactgaagatcaatgtatgaaagcttgtatggaagattgcttttgttctgtggctattttcaggttaggtgata |
174 |
Q |
| |
|
|||||| | ||||||| | |||||||||||||||| | ||| ||||||||||| ||||||||||| || ||||||||||||||||||||| ||| || |
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|
| T |
3040794 |
tcagatgccgtgcttctagagccttttactgaagaacgatgcatgaaagcttgcatggaagattgtttgtgttctgtggctattttcagggacggtagta |
3040893 |
T |
|
| Q |
175 |
gttgctggaaaaagaagttaccactctcaaatgggaaatatgatccaactcttgatggtgctaaggcctttttgaaagttagaa |
258 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||| | |||| |||| |||||||||||||||||||| || ||||| |||| |
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|
| T |
3040894 |
gttgttttaaaaagaagttaccactctcaaatgggagagttgatgcaacacttgatggtgctaaggccttcttaaaagtgagaa |
3040977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 274
Target Start/End: Complemental strand, 3037375 - 3037293
Alignment:
| Q |
192 |
ttaccactctcaaatgggaaatatgatccaactcttgatggtgctaaggcctttttgaaagttagaatacataatacctccat |
274 |
Q |
| |
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||||||||||||||||||| | |||| |||||||| ||||||||||||| || |||||| | |||| | ||||||||||||| |
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| T |
3037375 |
ttaccactctcaaatgggagagttgatgcaactcttaatggtgctaaggctttcttgaaaatgagaaaagataatacctccat |
3037293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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