View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4798_low_1 (Length: 506)
Name: NF4798_low_1
Description: NF4798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4798_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 59 - 491
Target Start/End: Original strand, 40779993 - 40780427
Alignment:
| Q |
59 |
gccaaccacaccgtgtggggagagattttggcatgttactttatagctggttaaaaacttaaaacaatcaaaattattctcaaatctcagtgtatagttg |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40779993 |
gccaaccacaccgtgtggggagagattttggcatgttactttatatttggttaaaaacttaaaacaatcaaaattattctcaaatctcagtgta--gttg |
40780090 |
T |
|
| Q |
159 |
gcagcaatttaagaacctaggtaaagcttttgggtacatttgtctaataataactataatagccatgcagaatgcagagcttcttgctatttaccatagt |
258 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40780091 |
gaagcaatttaagaacctaggtaaagcttttgggtacatttgtctaataataactataatagccatgcagaatgcagagcttcttgctatttaccatagt |
40780190 |
T |
|
| Q |
259 |
ctaattgcatcacttgaatcattttttattgaatgagtatctacacttacatagtgtctcctttaatttggaataacttacgtcatccatgag--tacat |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40780191 |
ctaattgcatcacttgaatcattttttattgaatgagtatctacactgacctagtgtctcctttaatttggaataacttacgtcatccatgagtttacat |
40780290 |
T |
|
| Q |
357 |
tatttcccgagtcnnnnnnnnnnnntttttctt---agaaatgtactaaaggtgacaactattgctcccaaatggtcagggc-ggaactccaaaatcata |
452 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40780291 |
tatttcccgagtc--gtgtgtgtgttttttctttccagaaatgtactaaaggtgacaactattgctcccaaatggtcagggcgggaactccaaaatcata |
40780388 |
T |
|
| Q |
453 |
atatatcagtatatcacaatcccatctttaacatgttct |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40780389 |
atatatcagtatatcacaatcccatctttaacatgttct |
40780427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 40779864 - 40779906
Alignment:
| Q |
18 |
taaactaggtcaaagttaagtccattaatagaggaattggggc |
60 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40779864 |
taaactaggtcaaagttaagtccattaatagaggaattggggc |
40779906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University