View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4798_low_2 (Length: 410)

Name: NF4798_low_2
Description: NF4798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4798_low_2
NF4798_low_2
[»] chr2 (7 HSPs)
chr2 (19-397)||(31726746-31727125)
chr2 (267-319)||(15244011-15244063)
chr2 (267-324)||(10069249-10069306)
chr2 (268-321)||(10459290-10459343)
chr2 (276-321)||(20900698-20900743)
chr2 (267-320)||(40713869-40713922)
chr2 (299-339)||(16734799-16734839)
[»] chr3 (2 HSPs)
chr3 (274-324)||(31757454-31757504)
chr3 (300-334)||(9027163-9027197)
[»] chr4 (4 HSPs)
chr4 (268-334)||(41594675-41594741)
chr4 (267-324)||(23226034-23226091)
chr4 (267-334)||(35663935-35664002)
chr4 (267-328)||(6924726-6924787)
[»] chr6 (3 HSPs)
chr6 (268-321)||(31323838-31323891)
chr6 (301-334)||(3788113-3788146)
chr6 (268-321)||(14446720-14446773)
[»] chr8 (3 HSPs)
chr8 (268-319)||(13209990-13210041)
chr8 (299-334)||(24692052-24692087)
chr8 (299-339)||(31758701-31758741)
[»] chr7 (2 HSPs)
chr7 (299-334)||(36033247-36033282)
chr7 (292-340)||(12270906-12270954)
[»] chr1 (3 HSPs)
chr1 (299-334)||(11897075-11897110)
chr1 (267-334)||(16448150-16448217)
chr1 (251-320)||(21537904-21537974)
[»] chr5 (2 HSPs)
chr5 (274-340)||(3346908-3346974)
chr5 (291-324)||(9006913-9006946)
[»] scaffold0003 (1 HSPs)
scaffold0003 (267-319)||(312760-312812)


Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 31727125 - 31726746
Alignment:
Q  19 aaaacgcccaacaacatcctacaaatatagttatatgaaattgttaggccaaacaatgtgaccaagcttcgaacctcgactcattcactagtgtgtgcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31727125 aaaacgcccaacaacatcctacaaatatagttatatgaaattgttaggccaaacaatgtgaccaagcttcgaacctcgactcattcactagtgtgtgcaa 31727026  T
Q  119 gccattttgtctatctacccnnnnnnn-ttactannnnnnnaattgagaaaccgaatttacatattgtataaattaaaaggatataataaagtaatcaca 217  Q
    ||||||||||||||||| ||        ||||||       |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31727025 gccattttgtctatctatccaaaaaaaattactatttttttaattgagaaaccgaatttacttattgtataaattaaaaggatataataaagtaatcaca 31726926  T
Q  218 tctattatcactccttctggccctatatattaaagaaaattgaatcaacaaagtttatgtatctgatacaaaatttgaacaagatacatcaacttttgtt 317  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31726925 tctattatcactccctctggccctatatattaaagaaaattgaatcaacaaagtttatgtatctgatataaaatttgaacaagatacatcaacttttgtt 31726826  T
Q  318 gacctaactttatcttacatataaaatcggagaaaatattaaatagacacttaccacattggccttgatttttcacaggt 397  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31726825 gacctaactttatcttacatataaaattggagaaaatattaaaaagacacttaccacattggccttgatttttcacaggt 31726746  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 15244063 - 15244011
Alignment:
Q  267 aaagtttatgtatctgatacaaaatttgaacaagatacatcaacttttgttga 319  Q
    |||||| ||||||||||| ||||||||  || |||||||||||||||||||||    
T  15244063 aaagttaatgtatctgattcaaaatttagactagatacatcaacttttgttga 15244011  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 324
Target Start/End: Original strand, 10069249 - 10069306
Alignment:
Q  267 aaagtttatgtatctgatacaaaatttgaacaagatacatcaacttttgttgacctaa 324  Q
    |||||||||||||||| |  |||| ||| || |||||||| |||||||||||||||||    
T  10069249 aaagtttatgtatctggttaaaaaattggactagatacattaacttttgttgacctaa 10069306  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 321
Target Start/End: Complemental strand, 10459343 - 10459290
Alignment:
Q  268 aagtttatgtatctgatacaaaatttgaacaagatacatcaacttttgttgacc 321  Q
    ||||| ||| |||||||||||| ||||||| | |||||| ||||||||||||||    
T  10459343 aagttgatgcatctgatacaaattttgaaccaaatacattaacttttgttgacc 10459290  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 321
Target Start/End: Complemental strand, 20900743 - 20900698
Alignment:
Q  276 gtatctgatacaaaatttgaacaagatacatcaacttttgttgacc 321  Q
    ||||||| | ||||||||| |||||||||||||||||||| |||||    
T  20900743 gtatctggttcaaaatttggacaagatacatcaacttttgctgacc 20900698  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 320
Target Start/End: Original strand, 40713869 - 40713922
Alignment:
Q  267 aaagtttatgtatctgatacaaaatttgaacaagatacatcaacttttgttgac 320  Q
    |||||| ||||||||| | |||| |||||||  |||||||||||||||||||||    
T  40713869 aaagttgatgtatctggtccaaattttgaacctgatacatcaacttttgttgac 40713922  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 16734839 - 16734799
Alignment:
Q  299 agatacatcaacttttgttgacctaactttatcttacatat 339  Q
    ||||||||||||||||||||||| |||||| ||||| ||||    
T  16734839 agatacatcaacttttgttgaccaaactttctcttatatat 16734799  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 31757504 - 31757454
Alignment:
Q  274 atgtatctgatacaaaatttgaacaagatacatcaacttttgttgacctaa 324  Q
    ||||||||||| |||| |||||||||||||||||||||||| |||||||||    
T  31757504 atgtatctgattcaaattttgaacaagatacatcaacttttattgacctaa 31757454  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 334
Target Start/End: Complemental strand, 9027197 - 9027163
Alignment:
Q  300 gatacatcaacttttgttgacctaactttatctta 334  Q
    |||||||||||||||||||||| ||||||||||||    
T  9027197 gatacatcaacttttgttgacccaactttatctta 9027163  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 334
Target Start/End: Complemental strand, 41594741 - 41594675
Alignment:
Q  268 aagtttatgtatctgatacaaaatttgaacaagatacatcaacttttgttgacctaactttatctta 334  Q
    ||||| ||||||||| | ||||||||| || | ||||||||||||||||||||| |||||| |||||    
T  41594741 aagttgatgtatctggttcaaaatttggaccatatacatcaacttttgttgacccaactttctctta 41594675  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 324
Target Start/End: Complemental strand, 23226091 - 23226034
Alignment:
Q  267 aaagtttatgtatctgatacaaaatttgaacaagatacatcaacttttgttgacctaa 324  Q
    |||||||||||||||||| |||| |||||||  |||||||||| ||||||||| ||||    
T  23226091 aaagtttatgtatctgatccaaattttgaactggatacatcaatttttgttgatctaa 23226034  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 334
Target Start/End: Complemental strand, 35664002 - 35663935
Alignment:
Q  267 aaagtttatgtatctgatacaaaatttgaacaagatacatcaacttttgttgacctaactttatctta 334  Q
    |||||| ||||||||| | ||||||||| || ||||||||||| ||||||| ||| |||||| |||||    
T  35664002 aaagttgatgtatctggttcaaaatttggaccagatacatcaatttttgtttacccaactttctctta 35663935  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 328
Target Start/End: Original strand, 6924726 - 6924787
Alignment:
Q  267 aaagtttatgtatctgatacaaaatttgaacaagatacatcaacttttgttgacctaacttt 328  Q
    |||||| ||| ||||||| ||||||||  || | |||||| |||||||||||||||||||||    
T  6924726 aaagttgatgcatctgattcaaaatttagaccaaatacattaacttttgttgacctaacttt 6924787  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 321
Target Start/End: Complemental strand, 31323891 - 31323838
Alignment:
Q  268 aagtttatgtatctgatacaaaatttgaacaagatacatcaacttttgttgacc 321  Q
    ||||| ||||||||| |||||| ||||||||| |||||| ||||||||||||||    
T  31323891 aagttgatgtatctggtacaaattttgaacaaaatacattaacttttgttgacc 31323838  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 334
Target Start/End: Original strand, 3788113 - 3788146
Alignment:
Q  301 atacatcaacttttgttgacctaactttatctta 334  Q
    |||||||||||||||||||||||| |||||||||    
T  3788113 atacatcaacttttgttgacctaaatttatctta 3788146  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 321
Target Start/End: Complemental strand, 14446773 - 14446720
Alignment:
Q  268 aagtttatgtatctgatacaaaatttgaacaagatacatcaacttttgttgacc 321  Q
    ||||| |||||||| ||| ||| ||||||||| |||||| ||||||||||||||    
T  14446773 aagttgatgtatctaatataaattttgaacaacatacattaacttttgttgacc 14446720  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 319
Target Start/End: Complemental strand, 13210041 - 13209990
Alignment:
Q  268 aagtttatgtatctgatacaaaatttgaacaagatacatcaacttttgttga 319  Q
    ||||| |||||||||||||||| ||||||| | |||||| ||||||||||||    
T  13210041 aagttgatgtatctgatacaaattttgaaccaaatacattaacttttgttga 13209990  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 334
Target Start/End: Original strand, 24692052 - 24692087
Alignment:
Q  299 agatacatcaacttttgttgacctaactttatctta 334  Q
    |||||||||||||||||||||||||||||| |||||    
T  24692052 agatacatcaacttttgttgacctaactttttctta 24692087  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 31758701 - 31758741
Alignment:
Q  299 agatacatcaacttttgttgacctaactttatcttacatat 339  Q
    |||| ||||||||||||||||||||||||| ||||| ||||    
T  31758701 agattcatcaacttttgttgacctaactttctcttatatat 31758741  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 334
Target Start/End: Complemental strand, 36033282 - 36033247
Alignment:
Q  299 agatacatcaacttttgttgacctaactttatctta 334  Q
    |||||||||||||||||||||||||| |||||||||    
T  36033282 agatacatcaacttttgttgacctaaatttatctta 36033247  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 340
Target Start/End: Original strand, 12270906 - 12270954
Alignment:
Q  292 ttgaacaagatacatcaacttttgttgacctaactttatcttacatata 340  Q
    |||||| ||||| || |||||||||||||| |||||| |||||||||||    
T  12270906 ttgaactagatagataaacttttgttgacccaactttttcttacatata 12270954  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 334
Target Start/End: Complemental strand, 11897110 - 11897075
Alignment:
Q  299 agatacatcaacttttgttgacctaactttatctta 334  Q
    |||||||||||||||||||||||||||||| |||||    
T  11897110 agatacatcaacttttgttgacctaactttctctta 11897075  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 334
Target Start/End: Original strand, 16448150 - 16448217
Alignment:
Q  267 aaagtttatgtatctgatacaaaatttgaacaagatacatcaacttttgttgacctaactttatctta 334  Q
    |||||||||||||||| | |||||||    | ||||||||||||||||||||||| |||||| |||||    
T  16448150 aaagtttatgtatctggttcaaaattcagtccagatacatcaacttttgttgacccaactttctctta 16448217  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 21537974 - 21537904
Alignment:
Q  251 agaaaattgaatcaacaaa-gtttatgtatctgatacaaaatttgaacaagatacatcaacttttgttgac 320  Q
    |||||||||| |||||||| ||| ||||||||||   ||||||||||  ||||||||||||||| ||||||    
T  21537974 agaaaattgagtcaacaaaagttgatgtatctgaactaaaatttgaatcagatacatcaactttcgttgac 21537904  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 3346974 - 3346908
Alignment:
Q  274 atgtatctgatacaaaatttgaacaagatacatcaacttttgttgacctaactttatcttacatata 340  Q
    ||||||||||| |||| ||| ||| || |||||||||||||||||||  |||||| ||||| |||||    
T  3346974 atgtatctgatccaaattttaaactaggtacatcaacttttgttgacgaaactttctcttatatata 3346908  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 9006946 - 9006913
Alignment:
Q  291 tttgaacaagatacatcaacttttgttgacctaa 324  Q
    ||||||| ||||||||||||||||||||||||||    
T  9006946 tttgaactagatacatcaacttttgttgacctaa 9006913  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 319
Target Start/End: Original strand, 312760 - 312812
Alignment:
Q  267 aaagtttatgtatctgatacaaaatttgaacaagatacatcaacttttgttga 319  Q
    |||||| ||||||||||| |||| ||| ||| ||||||||||| |||||||||    
T  312760 aaagttaatgtatctgatccaaattttaaactagatacatcaatttttgttga 312812  T

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