View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4798_low_3 (Length: 407)

Name: NF4798_low_3
Description: NF4798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4798_low_3
NF4798_low_3
[»] chr2 (6 HSPs)
chr2 (18-220)||(45699876-45700078)
chr2 (302-395)||(45699703-45699796)
chr2 (306-388)||(4920008-4920090)
chr2 (149-220)||(4920174-4920245)
chr2 (329-386)||(16289961-16290018)
chr2 (322-385)||(19397715-19397777)
[»] chr1 (7 HSPs)
chr1 (306-388)||(51446696-51446778)
chr1 (149-220)||(51446542-51446613)
chr1 (323-387)||(27557562-27557625)
chr1 (328-385)||(18819162-18819219)
chr1 (324-385)||(40533474-40533535)
chr1 (326-383)||(12667148-12667205)
chr1 (330-385)||(48528773-48528827)
[»] chr4 (15 HSPs)
chr4 (302-386)||(52137609-52137693)
chr4 (303-387)||(44499834-44499918)
chr4 (326-387)||(23102763-23102823)
chr4 (322-385)||(47667360-47667422)
chr4 (330-387)||(45536351-45536407)
chr4 (172-220)||(52137770-52137818)
chr4 (322-385)||(38554111-38554173)
chr4 (322-385)||(46795898-46795960)
chr4 (315-383)||(4872099-4872161)
chr4 (322-385)||(307673-307734)
chr4 (322-382)||(29665446-29665505)
chr4 (322-385)||(56001140-56001203)
chr4 (322-385)||(3528372-3528437)
chr4 (330-383)||(26631095-26631148)
chr4 (326-387)||(56086425-56086485)
[»] chr8 (7 HSPs)
chr8 (315-387)||(24191559-24191630)
chr8 (172-220)||(9853867-9853915)
chr8 (322-383)||(38168-38229)
chr8 (338-385)||(39516384-39516431)
chr8 (322-386)||(45395888-45395951)
chr8 (322-385)||(42793884-42793946)
chr8 (322-383)||(10668142-10668201)
[»] chr3 (7 HSPs)
chr3 (326-387)||(44601831-44601890)
chr3 (322-385)||(47766823-47766885)
chr3 (322-385)||(48253115-48253177)
chr3 (329-383)||(10339868-10339921)
chr3 (322-386)||(14744246-14744308)
chr3 (322-351)||(10301688-10301717)
chr3 (326-387)||(53193273-53193333)
[»] chr7 (7 HSPs)
chr7 (322-385)||(17288112-17288176)
chr7 (323-387)||(3330874-3330934)
chr7 (322-385)||(41515178-41515240)
chr7 (321-375)||(30333469-30333522)
chr7 (303-354)||(44376582-44376635)
chr7 (303-354)||(44385449-44385502)
chr7 (322-385)||(28326265-28326324)
[»] chr5 (5 HSPs)
chr5 (322-385)||(224459-224524)
chr5 (322-380)||(5975941-5975999)
chr5 (326-385)||(10736811-10736869)
chr5 (332-385)||(4124942-4124995)
chr5 (303-362)||(36898156-36898214)
[»] chr6 (1 HSPs)
chr6 (328-381)||(11968343-11968395)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 45700078 - 45699876
Alignment:
Q  18 aactgcagtcacttgggctttgtcaattacaacaagttaaaacatcacttaactacgtgaggctgaattcgagagcaaaatagtgaacaaatgctaggtg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45700078 aactgcagtcacttgggctttgtcaattacaacaagttaaaacatcacttaactacgtgaggctgaattcgagagcaaaatagtgaacaaatgctaggtg 45699979  T
Q  118 tggtacaaacattataataatgattgaagaattttttattttgctggataatggtggtgatgaaggttgttgtttatgtgtagtgatgagatgatggtgg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  45699978 tggtacaaacattataataatgattgaagaattttttattttgctggataatggtggtgacaaaggttgttgtttatgtgtagtgatgagatgatggtgg 45699879  T
Q  218 tga 220  Q
    |||    
T  45699878 tga 45699876  T

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Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 302 - 395
Target Start/End: Complemental strand, 45699796 - 45699703
Alignment:
Q  302 atggaaaaatgtttatagattgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactatagggatgatg 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  45699796 atggaaaaatgtttatagattgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgttgacggttcactataggtatgatg 45699703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 306 - 388
Target Start/End: Complemental strand, 4920090 - 4920008
Alignment:
Q  306 aaaaatgtttatagattgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactatagg 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4920090 aaaaatgtttatagattgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgatggttcactatagg 4920008  T

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Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 4920245 - 4920174
Alignment:
Q  149 ttttttattttgctggataatggtggtgatgaaggttgttgtttatgtgtagtgatgagatgatggtggtga 220  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4920245 ttttttattttgctggataatgatggtgatgaaggttgttgtttatgtgtagtgatgagatgatggtggtga 4920174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 329 - 386
Target Start/End: Complemental strand, 16290018 - 16289961
Alignment:
Q  329 gaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactata 386  Q
    ||||||||||||| ||||||||||||||| |||||||||||| |||| ||| ||||||    
T  16290018 gaagaagagagaaaatgatgaaaaatgaaaaaaaattagatgatgactgtttactata 16289961  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 385
Target Start/End: Complemental strand, 19397777 - 19397715
Alignment:
Q  322 tgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactat 385  Q
    |||||||||||||||||||||||||||||||  ||| ||||||||| ||  ||| |||||||||    
T  19397777 tgaggaagaagaagagagaagatgatgaaaagcgaa-aaaaattaggtgtcgacagttcactat 19397715  T

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Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 306 - 388
Target Start/End: Original strand, 51446696 - 51446778
Alignment:
Q  306 aaaaatgtttatagattgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactatagg 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  51446696 aaaaatgtttatagattgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcacaatagg 51446778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 51446542 - 51446613
Alignment:
Q  149 ttttttattttgctggataatggtggtgatgaaggttgttgtttatgtgtagtgatgagatgatggtggtga 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51446542 ttttttattttgctggataatggtggtgatgaaggttgttgtttatgtgtagtgatgagatgatggtggtga 51446613  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 27557562 - 27557625
Alignment:
Q  323 gaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactatag 387  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  27557562 gaggaagaagaagagagaagatgatgaaaaat-aaaaaaaattagatgctgacggttcactatag 27557625  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 328 - 385
Target Start/End: Complemental strand, 18819219 - 18819162
Alignment:
Q  328 agaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactat 385  Q
    |||| |||| |||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  18819219 agaaaaagaaagaagatgatgaaaaatgaaaaaaaattaggtgctgacgattcactat 18819162  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 40533474 - 40533535
Alignment:
Q  324 aggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactat 385  Q
    |||||||||||||||||||||||||||||  ||| | ||||||| ||| |||||||||||||    
T  40533474 aggaagaagaagagagaagatgatgaaaagcgaaaataaattaggtgccgacggttcactat 40533535  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 383
Target Start/End: Original strand, 12667148 - 12667205
Alignment:
Q  326 gaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcact 383  Q
    ||||||||||||||||||  ||||||| |||| ||||||||  |||||||||||||||    
T  12667148 gaagaagaagagagaagacaatgaaaagtgaaaaaaaattaagtgctgacggttcact 12667205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 385
Target Start/End: Original strand, 48528773 - 48528827
Alignment:
Q  330 aagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactat 385  Q
    ||||||||||||||||||||||| |||| || |||||| || ||||||||||||||    
T  48528773 aagaagagagaagatgatgaaaagtgaa-aataattaggtgttgacggttcactat 48528827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 52137693 - 52137609
Alignment:
Q  302 atggaaaaatgtttatagattgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactata 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  52137693 atggaaaaatgtttatagattgaggaagaagaagagagaagatgatgaaaaatgaaaaaaaattagctgctgacggttcactata 52137609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 387
Target Start/End: Original strand, 44499834 - 44499918
Alignment:
Q  303 tggaaaaatgtt--tatagattgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactatag 387  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||  | ||||||||| |||||||||||||||||||    
T  44499834 tggaaaaatgttgatatagattgaggaagaagaagagagaagatgatgaaaaat--aaaaaaattaggtgctgacggttcactatag 44499918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 387
Target Start/End: Complemental strand, 23102823 - 23102763
Alignment:
Q  326 gaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactatag 387  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  23102823 gaagaagaagagagaagatgatgaaaaataaa-aaaaattagatgctgacggttcactatag 23102763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 322 - 385
Target Start/End: Complemental strand, 47667422 - 47667360
Alignment:
Q  322 tgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactat 385  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||    
T  47667422 tgaggaagaagaagagagaagatgatgaaaagtgaa-aaaaattaggtgctgacggttcactat 47667360  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 330 - 387
Target Start/End: Original strand, 45536351 - 45536407
Alignment:
Q  330 aagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactatag 387  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  45536351 aagaagagagaagatgatgaaaaataaa-aaaaattagatgctgacggttcactatag 45536407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 52137818 - 52137770
Alignment:
Q  172 tggtgatgaaggttgttgtttatgtgtagtgatgagatgatggtggtga 220  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  52137818 tggtgatgaaggttgttgtttatgtgcagtgatgagatgatggtggtga 52137770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 385
Target Start/End: Complemental strand, 38554173 - 38554111
Alignment:
Q  322 tgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactat 385  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||  || ||||||||||||||    
T  38554173 tgaggaagaagaagagagaagatgatgaaaagtgaa-aaaaattaagtgatgacggttcactat 38554111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 385
Target Start/End: Original strand, 46795898 - 46795960
Alignment:
Q  322 tgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactat 385  Q
    |||||||| |||||||||||||||||||||| |||| ||||||||| ||| |||||||||||||    
T  46795898 tgaggaaggagaagagagaagatgatgaaaagtgaa-aaaaattaggtgccgacggttcactat 46795960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 4872099 - 4872161
Alignment:
Q  315 tatagattgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcact 383  Q
    |||||||||||||||||||||||||||||||      ||| || ||||||||| |||||||||||||||    
T  4872099 tatagattgaggaagaagaagagagaagatg------aataaaaaaaaattaggtgctgacggttcact 4872161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 385
Target Start/End: Original strand, 307673 - 307734
Alignment:
Q  322 tgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactat 385  Q
    |||||||| |||||||||||||||||||||    || ||||||||| |||||||||||||||||    
T  307673 tgaggaaggagaagagagaagatgatgaaagt--aaaaaaaattaggtgctgacggttcactat 307734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 382
Target Start/End: Original strand, 29665446 - 29665505
Alignment:
Q  322 tgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcac 382  Q
    ||||||||||||||||||||||||| ||||| |||| ||||||||| |  |||||||||||    
T  29665446 tgaggaagaagaagagagaagatgaagaaaagtgaa-aaaaattaggtattgacggttcac 29665505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 385
Target Start/End: Original strand, 56001140 - 56001203
Alignment:
Q  322 tgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactat 385  Q
    |||||| ||||||||||||||| |||||||| || | ||||||||| ||| |||| ||||||||    
T  56001140 tgaggaggaagaagagagaagaagatgaaaagtggaaaaaaattaggtgccgacgattcactat 56001203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 385
Target Start/End: Complemental strand, 3528437 - 3528372
Alignment:
Q  322 tgaggaagaagaagagagaagatgatgaaaaatgaaca--aaaattagatgctgacggttcactat 385  Q
    |||||| || ||||||||||||||||||||| |||| |  |||||||| || ||||||||||||||    
T  3528437 tgaggaggaggaagagagaagatgatgaaaagtgaaaaataaaattaggtgttgacggttcactat 3528372  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 383
Target Start/End: Original strand, 26631095 - 26631148
Alignment:
Q  330 aagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcact 383  Q
    |||||||||||||||||| |||| |||| ||||||||| |||||| | ||||||    
T  26631095 aagaagagagaagatgattaaaagtgaaaaaaaattaggtgctgatgattcact 26631148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 387
Target Start/End: Original strand, 56086425 - 56086485
Alignment:
Q  326 gaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactatag 387  Q
    |||||||||||||  |||||||||||| |||| ||||||||| || ||||| ||||||||||    
T  56086425 gaagaagaagagaagagatgatgaaaagtgaa-aaaaattaggtgatgacgattcactatag 56086485  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 315 - 387
Target Start/End: Complemental strand, 24191630 - 24191559
Alignment:
Q  315 tatagattgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactatag 387  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||    
T  24191630 tatagattgaggaagaagaagagagaagatgatgaaaaat-aaaaaaaattaggtgctgacggttcactatag 24191559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 9853915 - 9853867
Alignment:
Q  172 tggtgatgaaggttgttgtttatgtgtagtgatgagatgatggtggtga 220  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9853915 tggtgatgatggttgttgtttatgtgtagtgatgagatgatggtggtga 9853867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 383
Target Start/End: Complemental strand, 38229 - 38168
Alignment:
Q  322 tgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcact 383  Q
    |||||||| |||||||||||||||||||||| || | ||||||||| |||||||||||||||    
T  38229 tgaggaaggagaagagagaagatgatgaaaagtggaaaaaaattaggtgctgacggttcact 38168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 385
Target Start/End: Original strand, 39516384 - 39516431
Alignment:
Q  338 agaagatgatgaaaaatgaacaaaaattagatgctgacggttcactat 385  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||    
T  39516384 agaagatgatgaaaaatgaaaaaagattagatgctgacggttcactat 39516431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 45395888 - 45395951
Alignment:
Q  322 tgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactata 386  Q
    |||||||||||||||| |||||||||||||| |||| ||||||||| ||| || |||| ||||||    
T  45395888 tgaggaagaagaagagggaagatgatgaaaagtgaa-aaaaattaggtgccgatggtttactata 45395951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 322 - 385
Target Start/End: Complemental strand, 42793946 - 42793884
Alignment:
Q  322 tgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactat 385  Q
    |||||||||||||||||||||||||||||||  ||| ||||||||| ||  || ||||||||||    
T  42793946 tgaggaagaagaagagagaagatgatgaaaagcgaa-aaaaattaggtgtcgatggttcactat 42793884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 383
Target Start/End: Complemental strand, 10668201 - 10668142
Alignment:
Q  322 tgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcact 383  Q
    ||||||||||||||||||||||||| ||||| |||  ||||||||  ||||||||| |||||    
T  10668201 tgaggaagaagaagagagaagatgaagaaaagtga--aaaaattatgtgctgacgggtcact 10668142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 326 - 387
Target Start/End: Complemental strand, 44601890 - 44601831
Alignment:
Q  326 gaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactatag 387  Q
    ||||||||||||||| ||||||||||||| ||  ||||||||||||||||||||||||||||    
T  44601890 gaagaagaagagagaggatgatgaaaaataaa--aaaattagatgctgacggttcactatag 44601831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 385
Target Start/End: Original strand, 47766823 - 47766885
Alignment:
Q  322 tgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactat 385  Q
    |||| ||||||||||||||||||||| |||| |||| ||||||||| |||||||||||||||||    
T  47766823 tgagaaagaagaagagagaagatgatcaaaagtgaa-aaaaattaggtgctgacggttcactat 47766885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 385
Target Start/End: Complemental strand, 48253177 - 48253115
Alignment:
Q  322 tgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactat 385  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||| || |||| |||||||||    
T  48253177 tgaggaagaagaagagagaagatgaagaaaaatgaa-aaaaattaggtgttgacagttcactat 48253115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 383
Target Start/End: Original strand, 10339868 - 10339921
Alignment:
Q  329 gaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcact 383  Q
    |||||||||||||||||||||||| |||| ||||||||  |||||||||||||||    
T  10339868 gaagaagagagaagatgatgaaaagtgaa-aaaaattatgtgctgacggttcact 10339921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 14744308 - 14744246
Alignment:
Q  322 tgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactata 386  Q
    ||||||||||||| || |||||||||||||| |||  ||||||||| |||||| |||||||||||    
T  14744308 tgaggaagaagaacagggaagatgatgaaaagtga--aaaaattaggtgctgatggttcactata 14744246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 351
Target Start/End: Original strand, 10301688 - 10301717
Alignment:
Q  322 tgaggaagaagaagagagaagatgatgaaa 351  Q
    ||||||||||||||||||||||||||||||    
T  10301688 tgaggaagaagaagagagaagatgatgaaa 10301717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 387
Target Start/End: Complemental strand, 53193333 - 53193273
Alignment:
Q  326 gaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactatag 387  Q
    ||||| |||||||||||||| |||||| |||| ||||| ||| || ||||||||||||||||    
T  53193333 gaagaggaagagagaagatggtgaaaagtgaa-aaaaaataggtgttgacggttcactatag 53193273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 385
Target Start/End: Original strand, 17288112 - 17288176
Alignment:
Q  322 tgaggaagaagaagagagaagatgatgaaaaat-gaacaaaaattagatgctgacggttcactat 385  Q
    |||||||| |||||||||||||||||||||| | ||| ||||||||| |||||||||||||||||    
T  17288112 tgaggaaggagaagagagaagatgatgaaaagtggaaaaaaaattaggtgctgacggttcactat 17288176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 3330934 - 3330874
Alignment:
Q  323 gaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactatag 387  Q
    ||||||||||||||||||||||||||||||||    ||||||||  |||||||||||||||||||    
T  3330934 gaggaagaagaagagagaagatgatgaaaaat----aaaaattaagtgctgacggttcactatag 3330874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 385
Target Start/End: Complemental strand, 41515240 - 41515178
Alignment:
Q  322 tgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactat 385  Q
    |||||||| |||||||||||||| ||||||| |||| ||||||||| ||| |||||||||||||    
T  41515240 tgaggaaggagaagagagaagattatgaaaagtgaa-aaaaattaggtgccgacggttcactat 41515178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 375
Target Start/End: Complemental strand, 30333522 - 30333469
Alignment:
Q  321 ttgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgac 375  Q
    ||||||||||||||||||||| |||||||||  |||| ||||||||| |||||||    
T  30333522 ttgaggaagaagaagagagaaaatgatgaaaggtgaa-aaaaattaggtgctgac 30333469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 354
Target Start/End: Original strand, 44376582 - 44376635
Alignment:
Q  303 tggaaaaatgtt--tatagattgaggaagaagaagagagaagatgatgaaaaat 354  Q
    ||||||||||||  |||||| |||||| || |||||||||||||||||||||||    
T  44376582 tggaaaaatgttgatatagaatgaggaggaggaagagagaagatgatgaaaaat 44376635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 354
Target Start/End: Original strand, 44385449 - 44385502
Alignment:
Q  303 tggaaaaatgtt--tatagattgaggaagaagaagagagaagatgatgaaaaat 354  Q
    ||||||||||||  |||||| |||||| || |||||||||||||||||||||||    
T  44385449 tggaaaaatgttgatatagaatgaggaggaggaagagagaagatgatgaaaaat 44385502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 385
Target Start/End: Original strand, 28326265 - 28326324
Alignment:
Q  322 tgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactat 385  Q
    |||||||| |||||||||||   ||||||||||||| ||||||||| ||| |||||||||||||    
T  28326265 tgaggaaggagaagagagaa---gatgaaaaatgaa-aaaaattaggtgccgacggttcactat 28326324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 385
Target Start/End: Original strand, 224459 - 224524
Alignment:
Q  322 tgaggaagaagaagagagaagatgatgaaaaatg--aacaaaaattagatgctgacggttcactat 385  Q
    ||||||||||||||||||||||||||||||| ||  || |||||||||| | ||||||||||||||    
T  224459 tgaggaagaagaagagagaagatgatgaaaagtgaaaaaaaaaattagacgatgacggttcactat 224524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 380
Target Start/End: Complemental strand, 5975999 - 5975941
Alignment:
Q  322 tgaggaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttc 380  Q
    |||||||| |||||||||||||||||||||| |||| ||||||||| ||| ||||||||    
T  5975999 tgaggaaggagaagagagaagatgatgaaaagtgaaaaaaaattaggtgccgacggttc 5975941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 385
Target Start/End: Original strand, 10736811 - 10736869
Alignment:
Q  326 gaagaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactat 385  Q
    ||||||||||||||||||||||| ||| |||| ||||||||  || ||||||||||||||    
T  10736811 gaagaagaagagagaagatgatggaaagtgaa-aaaaattaagtgttgacggttcactat 10736869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 385
Target Start/End: Complemental strand, 4124995 - 4124942
Alignment:
Q  332 gaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttcactat 385  Q
    |||| ||||||||||||||||||||| |  ||| || |||||||||||||||||    
T  4124995 gaagggagaagatgatgaaaaatgaaaattaatcaggtgctgacggttcactat 4124942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 362
Target Start/End: Complemental strand, 36898214 - 36898156
Alignment:
Q  303 tggaaaaatgtt--tatagattgaggaagaagaagagagaagatgatgaaaaatgaacaaaa 362  Q
    ||||||||||||  |||||||||||||||||||   |||||||||||||||| |||| ||||    
T  36898214 tggaaaaatgttgatatagattgaggaagaaga---gagaagatgatgaaaagtgaaaaaaa 36898156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 381
Target Start/End: Original strand, 11968343 - 11968395
Alignment:
Q  328 agaagaagagagaagatgatgaaaaatgaacaaaaattagatgctgacggttca 381  Q
    ||||||||||||||||||||||||| |||| |||||||||||| ||| ||||||    
T  11968343 agaagaagagagaagatgatgaaaagtgaa-aaaaattagatgttgatggttca 11968395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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