View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4798_low_4 (Length: 406)
Name: NF4798_low_4
Description: NF4798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4798_low_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 48487216 - 48486809
Alignment:
| Q |
1 |
gattttcatttgggtgatattgtttgggcaaaatgtggcaagacttttccggcatggcctgctgttgtcattgatcctattttacaagctcctgagtctg |
100 |
Q |
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| T |
48487216 |
gattttcatttgggtgatattgtttgggcaaaatgtggcaagacttttccggcatggcctgctgttgtcattgatcctatttcacaagctcctgagtctg |
48487117 |
T |
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| Q |
101 |
ttcttagatgttgtgttcccgatgcaatttgtgttatgtttttcggttattcgaaaaatggaaagcacagggtaagctcttctcaacacacctttatgta |
200 |
Q |
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| T |
48487116 |
ttcttagacgttgtgttcccgatgcaatttgtgttatgtttttcggttattcgaaaaatggaaagcacagggtaagctcttctcaacacacctttatgta |
48487017 |
T |
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| Q |
201 |
aaggtttgagttgttgttattgttgaaatctaatgaatttgtgatgggcacttggcaggactatgcatgggcgaagcaggggatggtattccccttcttg |
300 |
Q |
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| T |
48487016 |
aaggtttgagttgttgttattgttgaaatctaatgaatttgtgatgggcacttggcaggactatgcatgggcgaagcaggggatggtattccccttcttg |
48486917 |
T |
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| Q |
301 |
gaattcatggataggtttgtgtttgtg--tgtgattttggttgttgttctgcctgcaagaatatttggcttgtattcgctcatattaagaataatcttgt |
398 |
Q |
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| T |
48486916 |
gaattcatggataggtttgtgtttgtgtgtgtgattttggttgttgttctgcctgcaagaatatttggcttgtactcgctcatattaagaataatcttgt |
48486817 |
T |
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| Q |
399 |
tcagattc |
406 |
Q |
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| T |
48486816 |
tcagattc |
48486809 |
T |
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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 10032571 - 10032725
Alignment:
| Q |
9 |
tttgggtgatattgtttgggcaaaatgtggcaagacttttccggcatggcctgctgttgtcattgatcctattttacaagctcctgagtctgttcttaga |
108 |
Q |
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||||||||||||||||||||| ||||| || |||| |||||||| ||||| | ||| || ||||||||| | | | | |||||| | || || | | || |
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| T |
10032571 |
tttgggtgatattgtttgggcgaaatgcgggaagaggtttccggcttggcccggtgtggtgattgatcctctctcagaggctcctcaatccgt-catcga |
10032669 |
T |
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| Q |
109 |
-tgttgtgttcccgatgcaatttgtgttatgtttttcggttattcgaaaaatggaa |
163 |
Q |
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| T |
10032670 |
ctgttgtgttccggatacactttgtgtgatgtttttcggttattcgaaaaatggaa |
10032725 |
T |
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