View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4798_low_8 (Length: 215)
Name: NF4798_low_8
Description: NF4798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4798_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 3669159 - 3669365
Alignment:
| Q |
1 |
ttgtcctctatttcagtttttcttatttacttcttcaaggatcccttgaatatcatttcattttataaaattaagattcaatatcattggtagttgaagg |
100 |
Q |
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| T |
3669159 |
ttgtcctctattttagtttatcttatttccttcttcaaggatcccttaaatatcatttcattttataaaattaagattcaatatcattggtgattgaagg |
3669258 |
T |
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| Q |
101 |
cgaaacaaatcaattttgtttttaactaccacatgagatggctcaatcctcttttatgtttggaaggtgttttgtaacgccaattttttggttttctttc |
200 |
Q |
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| T |
3669259 |
cgaaacaaatcaattttgtttttaactaccacatgagatggttcagtcctcttttatgtttggaaggtgttttgtaacaccaattttttggttttctttc |
3669358 |
T |
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| Q |
201 |
tgatgat |
207 |
Q |
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||||||| |
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| T |
3669359 |
tgatgat |
3669365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 32195980 - 32196053
Alignment:
| Q |
103 |
aaacaaatcaattttgtttttaactaccacatgagatggctcaatcctcttttatgtttggaaggtgttttgtaa |
177 |
Q |
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| T |
32195980 |
aaacacatcaattttacttttaactatcacatgtggtggttcaatcct-ttttatgtttggaaggtgttttgtaa |
32196053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 23847932 - 23847994
Alignment:
| Q |
100 |
gcgaaacaaatcaattttgtttttaactaccacatgagatggctcaatcctcttttatgtttg |
162 |
Q |
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| T |
23847932 |
gcgaaacacatcaattttgcttttaactaccatatgtggtggctaaatcctcttttatgtttg |
23847994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 18430119 - 18430171
Alignment:
| Q |
101 |
cgaaacaaatcaattttgtttttaactaccacatgagatggctcaatcctctt |
153 |
Q |
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| T |
18430119 |
cgaaacacatcaactttgtttttgactaccacatgtgatgactaaatcctctt |
18430171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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