View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4799-Insertion-2 (Length: 659)
Name: NF4799-Insertion-2
Description: NF4799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4799-Insertion-2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 551; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 8 - 659
Target Start/End: Complemental strand, 41231165 - 41230521
Alignment:
| Q |
8 |
caagattgaggcaataataaattatacacatcccttcttatgataagtcctagcttggcagatctagcttgcacatgatatatgataacagtcatcgaaa |
107 |
Q |
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| T |
41231165 |
caagattgaggcaataataaattatacacatcccttcttatgataagtcctagcttggcagatctagcttgcacatgatatatgataacagtcatcgaaa |
41231066 |
T |
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| Q |
108 |
ttgaaacagaaccacagtaagcatgaagtagagacagaggaaaagcgaccaatttggagaatggtcggtcgagtgaagctgatctaacagaaaactgaac |
207 |
Q |
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| T |
41231065 |
ttgaaacagaaccacagtaagcatgaagtagagacagaggaaaagcgaccaatttggagaatggtcggtcgagtgaagctgatctaacagaaaactgaac |
41230966 |
T |
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| Q |
208 |
ataaaacccgtaaagcttccagaaggagctccttcctgcaaaattcatacgcttgataactttcttgcatccctcccttcaaggtagatttttaaggaga |
307 |
Q |
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| T |
41230965 |
ataaaacccgtaaagcttccagaaggagctccttcctgcaaaattcatacgcttgataactttcttgcatccctcccttcaaggtagatttttaaggaga |
41230866 |
T |
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| Q |
308 |
tgcagcagcttagagtagatttaatcaaccgattactactagaagaaattttaaaacatcagaaagaaggnnnnnnnnnnngaataaaagggaattttag |
407 |
Q |
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| T |
41230865 |
tgcagcagcttagagtagactcaatcaaccgattactactagaagaaattttaaaacattagaaagaaggaaaaaaaaaaagaataaaagggaattttag |
41230766 |
T |
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| Q |
408 |
caatttccttcttgaagttgctgggatgaaagcttacaagagaaaatatcaaattgtggagaatagtcaaacttgcatgtgcaagtattgatgcattttt |
507 |
Q |
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| T |
41230765 |
caatttccttcttgaagttgctgggatgaaagcttacaagagaaaatatccaatagtggagaatactcaaacttgcatgtgcaagtattgatgcattttt |
41230666 |
T |
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| Q |
508 |
gagactgcaatttgcagaatagctctttctcatgagtcg-aaaaaatcttattgtagtgaaagacagaaatttacctccagttcgactgtcctgcatgat |
606 |
Q |
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| T |
41230665 |
gagactgcaatttggagaatagctctttctcatgagtcgaaaaaaatcttattgtagt--------gaaatttacctccagttcgactgtcctgcatgat |
41230574 |
T |
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| Q |
607 |
ccaatgtctgccctaaacgaatgccaacttcttgtgtctttatttcacttgga |
659 |
Q |
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| T |
41230573 |
ccaatgtctgccctaaacgaatgccaacttcttgtgtctttatttcagttgga |
41230521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 211
Target Start/End: Complemental strand, 6110339 - 6110308
Alignment:
| Q |
180 |
gtgaagctgatctaacagaaaactgaacataa |
211 |
Q |
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| T |
6110339 |
gtgaagctgatctaacagaaaactgaacataa |
6110308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 413 - 519
Target Start/End: Complemental strand, 42414443 - 42414337
Alignment:
| Q |
413 |
tccttcttgaagttgctgggatgaaagcttacaagagaaaatatcaaattgtggagaatagtcaaacttgcatgtgcaagta-ttgatgcatttttgaga |
511 |
Q |
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||||||| ||||||||||||||| ||||| ||||||| ||| || |||||||||| ||||||||||| ||||||| | |||||| |||||||||| |
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| T |
42414443 |
tccttctcaaagttgctgggatgagagcttctgagagaaag-atccaactgtggagaatggtcaaacttgcctgtgcaatcaattgatgaatttttgaga |
42414345 |
T |
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| Q |
512 |
ctgcaatt |
519 |
Q |
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| T |
42414344 |
ctgcaatt |
42414337 |
T |
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