View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4799_high_11 (Length: 328)
Name: NF4799_high_11
Description: NF4799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4799_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 2 - 306
Target Start/End: Original strand, 32705787 - 32706091
Alignment:
| Q |
2 |
agaaaagaggtttcttatccgtttcgcaattgatttgttttaagtttaatagaaagtttagacgtggccttgtttctccgtgtgattttgtttagggaaa |
101 |
Q |
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| T |
32705787 |
agaaaagaggtttcttatccgtttcgcaaatgatttgttttaagtttaatagaaagtttagacgtggccttgtttctccgtgtgattttgtttagggaaa |
32705886 |
T |
|
| Q |
102 |
ctccttactaatgaagcacggacacctaaaggattaagtgtgtcacggtgtccgacactcgtacgacaagtgtcggaccaactcagaccggtgtctcaaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32705887 |
ctccttactaatgaagcacggacacctaaaggattaagtgtgtcacggtgtccgacactcgtacgacaagtgtcggaccaactcagaccggtgtctcaaa |
32705986 |
T |
|
| Q |
202 |
aatttgnnnnnnnnngctttgcttcgacactcgttggatcgttgtccgacacctgtatgatactcatacaacacgtgttggacaactcggacaagtgtcc |
301 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32705987 |
aatttgtttttttttgctttgcttcgacacttgttggatcgttgtccgacacctgtatgatactcatacaacacatgttggacaactcggacaagtgtcc |
32706086 |
T |
|
| Q |
302 |
cattc |
306 |
Q |
| |
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||||| |
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| T |
32706087 |
cattc |
32706091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 217 - 298
Target Start/End: Original strand, 879941 - 880022
Alignment:
| Q |
217 |
gctttgcttcgacactcgttggatcgttgtccgacacctgtatgatactcatacaacacgtgttggacaactcggacaagtg |
298 |
Q |
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| T |
879941 |
gctttgcttcgacactccatggatcggtgtccaacacctgtatgatgctcatataacatgtgtcagacaactcgaacaagtg |
880022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 2 - 303
Target Start/End: Complemental strand, 35530607 - 35530307
Alignment:
| Q |
2 |
agaaaagaggtttcttatccgtttcgcaattgatttgttttaagtttaatagaaagtttagacgtggccttgtttctccgtgtgattttgtttagggaaa |
101 |
Q |
| |
|
||||| ||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| |||||| |
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| T |
35530607 |
agaaaggaggtttgttatccgtttcacaattgatttgttttaattttaatagaaagtttagacgtggccttgtttctgcatgtgattttgtttcgggaaa |
35530508 |
T |
|
| Q |
102 |
ctccttactaatgaagcacggacacctaaaggattaagtgtgtcacggtgtccgacactcgtacgacaagtgtcggaccaactcagaccggtgtctcaaa |
201 |
Q |
| |
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|||||| ||||||||||||||||| ||||||| | |||||| ||||||||||||| |||||||| |||||||| ||||||| ||||||||| |||| |
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| T |
35530507 |
ttccttagctatgaagcacggacacctttaggattaggcgtgtcatggtgtccgacacttgtacgacacgtgtcggatcaactcacaccggtgtcacaaa |
35530408 |
T |
|
| Q |
202 |
aatttgnnnnnnnnngctttgcttcgacactcgttggatcgttgtccgacacctgtatgatactcatacaacacgtgttggacaactcggacaagtgtcc |
301 |
Q |
| |
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| |||| ||||||||| |||||| |||| ||| ||||| |||||| ||||| ||| ||||||||||||| ||||||||||||||||||||| |
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| T |
35530407 |
agtttgttttttttc-ctttgcttcaacactccttgggtcggtgtcctacacctatatgacacttatacaacacgtgtcggacaactcggacaagtgtcc |
35530309 |
T |
|
| Q |
302 |
ca |
303 |
Q |
| |
|
|| |
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|
| T |
35530308 |
ca |
35530307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 218 - 303
Target Start/End: Original strand, 30882816 - 30882901
Alignment:
| Q |
218 |
ctttgcttcgacactcgttggatcgttgtccgacacctgtatgatactcatacaacacgtgttggacaactcggacaagtgtccca |
303 |
Q |
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||||||||||||||| ||| |||| ||| ||||||||| ||| ||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
30882816 |
ctttgcttcgacacttcttgaatcggggtctgacacctgtttgacactcatacatcacgtgtcggacaactcggacaagtgtccca |
30882901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 305
Target Start/End: Original strand, 30955361 - 30955441
Alignment:
| Q |
225 |
tcgacactcgttggatcgttgtccgacacctgtatgatactcatacaacacgtgttggacaactcggacaagtgtcccatt |
305 |
Q |
| |
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|||||||| |||| ||| |||| ||||| ||||||| |||||||| |||| ||| | |||||||| |||||||||||||| |
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| T |
30955361 |
tcgacacttcttgggtcggtgtctgacacttgtatgacactcataccacacatgtcgaacaactcgaacaagtgtcccatt |
30955441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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