View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4799_high_12 (Length: 328)

Name: NF4799_high_12
Description: NF4799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4799_high_12
NF4799_high_12
[»] chr1 (2 HSPs)
chr1 (143-319)||(17441735-17441911)
chr1 (178-260)||(31070969-31071051)
[»] chr8 (4 HSPs)
chr8 (141-319)||(2836638-2836816)
chr8 (142-312)||(32671641-32671833)
chr8 (64-124)||(7768991-7769051)
chr8 (196-260)||(15051106-15051170)
[»] chr2 (3 HSPs)
chr2 (144-319)||(27990697-27990872)
chr2 (144-319)||(28077230-28077405)
chr2 (144-274)||(5590647-5590775)
[»] chr7 (1 HSPs)
chr7 (144-319)||(38130381-38130558)
[»] chr3 (1 HSPs)
chr3 (213-258)||(27405090-27405135)


Alignment Details
Target: chr1 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 143 - 319
Target Start/End: Complemental strand, 17441911 - 17441735
Alignment:
Q  143 agagacttgttatacggtacgacaactctcgacacacgaatttgcacgatacgttcaactacaactggatttctcttttaatggttgctacattctaata 242  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17441911 agagacttgctatacggtacgacaactctcggcacacgaatttgcacgatacgttcaactacaactggatttctcttttaatggttgctacattctaata 17441812  T
Q  243 ttttataataaaacataatcctagttattataaaacatccaaatgagacagacggtaatatatatctatgtctgtga 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  17441811 ttttataataaaacataatcctagttattataaaacatccaaatgagacaaacggtaatatatatctatgcctgtga 17441735  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 31070969 - 31071051
Alignment:
Q  178 acgaatttgcacgatacgttcaactacaactggatttctcttttaatggttgctacattctaatattttataataaaacataa 260  Q
    |||||||||||||  || |||||||| |  |||  |||||||||||||| | |||| ||  ||||||||||||||||||||||    
T  31070969 acgaatttgcacggcactttcaactaaaggtggtattctcttttaatgggtactaccttacaatattttataataaaacataa 31071051  T

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Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 141 - 319
Target Start/End: Original strand, 2836638 - 2836816
Alignment:
Q  141 aaagagacttgttatacggtacgacaactctcgacacacgaatttgcacgatacgttcaactacaactggatttctcttttaatggttgctacattctaa 240  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2836638 aaagagacttgctatacggtacgacagctctcgacacacgaatttgcacgatacgttcaactacaactggatttctcttttaatggttgctacattctaa 2836737  T
Q  241 tattttataataaaacataatcctagttattataaaacatccaaatgagacagacggtaatatatatctatgtctgtga 319  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||    
T  2836738 tattttataataaaacataatcctagttattataaaacatctaaatgagacaaacggtaatatatatctatgcctgtga 2836816  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 142 - 312
Target Start/End: Original strand, 32671641 - 32671833
Alignment:
Q  142 aagagacttgttatacggtacgacaactctc-gacacacgaatttgcacgatacgttcaactacaactggatt----tctcttttaatggttgctac--- 233  Q
    |||||||||| |||||||||||| | ||||| | |||||||||||||||||||||||||||||||| ||||||    ||||||||||||||||||||       
T  32671641 aagagacttgctatacggtacgatagctctctggcacacgaatttgcacgatacgttcaactacaagtggattaatttctcttttaatggttgctacatt 32671740  T
Q  234 -------------attctaatattttataataaaacataatcctagttattataaaacatccaaatgagacagacggta-atatatatctatg 312  Q
                 ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||| | |||||||||||||    
T  32671741 ctaatattttataattctaatattttataataaaacataaacatagttattataaaacatccaaatgagacaaacgggatatatatatctatg 32671833  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 7769051 - 7768991
Alignment:
Q  64 ctgcaccaattgtcaccatttgcaaatttggtttcatgatagaaacctcctatgcgaccaa 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7769051 ctgcaccaattgtcaccatttgcaaatttggtttcatgatagaaacctcctatgtgaccaa 7768991  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 260
Target Start/End: Complemental strand, 15051170 - 15051106
Alignment:
Q  196 ttcaactacaactggatttctcttttaatggttgctacattctaatattttataataaaacataa 260  Q
    ||||||||||| ||| ||||| ||||||||| ||| || || || ||||||||||||||||||||    
T  15051170 ttcaactacaagtggttttcttttttaatggatgcaaccttatactattttataataaaacataa 15051106  T

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Target: chr2 (Bit Score: 156; Significance: 7e-83; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 144 - 319
Target Start/End: Original strand, 27990697 - 27990872
Alignment:
Q  144 gagacttgttatacggtacgacaactctcgacacacgaatttgcacgatacgttcaactacaactggatttctcttttaatggttgctacattctaatat 243  Q
    |||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27990697 gagacttgctatacggtacgacagctctcggcacacgaatttgcacgatacgttcaactacaactggatttctcttttaatggttgctacattctaatat 27990796  T
Q  244 tttataataaaacataatcctagttattataaaacatccaaatgagacagacggtaatatatatctatgtctgtga 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  27990797 tttataataaaacataatcctagttattataaaacatccaaatgagacaaacggtaatatatatctatgcctgtga 27990872  T

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Target: chr2; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 144 - 319
Target Start/End: Original strand, 28077230 - 28077405
Alignment:
Q  144 gagacttgttatacggtacgacaactctcgacacacgaatttgcacgatacgttcaactacaactggatttctcttttaatggttgctacattctaatat 243  Q
    |||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28077230 gagacttgctatacggtacgacagctctcggcacacgaatttgcacgatacgttcaactacaactggatttctcttttaatggttgctacattctaatat 28077329  T
Q  244 tttataataaaacataatcctagttattataaaacatccaaatgagacagacggtaatatatatctatgtctgtga 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  28077330 tttataataaaacataatcctagttattataaaacatccaaatgagacaaacggtaatatatatctatgcctgtga 28077405  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 274
Target Start/End: Complemental strand, 5590775 - 5590647
Alignment:
Q  144 gagacttgttatacggtacgacaactctcgacacacgaatttgcacgatacgttcaactacaactggatttctcttttaatggttgctacattctaatat 243  Q
    |||| ||| ||||||||||||||| ||   |||||||||||||||||| |  ||||| | ||  |||  |||||||||||||  |||||| ||  |||||    
T  5590775 gagagttgctatacggtacgacaaatca--acacacgaatttgcacgacaacttcaatttcatgtggtattctcttttaatgagtgctaccttacaatat 5590678  T
Q  244 tttataataaaacataatcctagttattata 274  Q
    ||||||||||||||| ||||| |||| ||||    
T  5590677 tttataataaaacatcatcctggttaatata 5590647  T

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Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 144 - 319
Target Start/End: Complemental strand, 38130558 - 38130381
Alignment:
Q  144 gagacttgttatacggtacgacaactctcgacacacgaatttgcacgatacgttcaactacaactggatttctcttttaatggttgctacattctaatat 243  Q
    |||||||| |||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38130558 gagacttgctatacggtacgacggctctcggcacacgaatttgcacgatacgttcaactacaactggatttctcttttaatggttgctacattataatat 38130459  T
Q  244 tttataataaaacataatcctagt--tattataaaacatccaaatgagacagacggtaatatatatctatgtctgtga 319  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  38130458 tttataataaaacataatcctagttatattataaaacatccaaatgagacaaacggtaatatatatctatgcctgtga 38130381  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 27405090 - 27405135
Alignment:
Q  213 ttctcttttaatggttgctacattctaatattttataataaaacat 258  Q
    |||||||||||||| |||||| ||  ||||||||||||||||||||    
T  27405090 ttctcttttaatgggtgctaccttacaatattttataataaaacat 27405135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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