View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4799_high_2 (Length: 361)

Name: NF4799_high_2
Description: NF4799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4799_high_2
NF4799_high_2
[»] chr4 (1 HSPs)
chr4 (1-321)||(55861129-55861451)
[»] chr5 (1 HSPs)
chr5 (202-357)||(3820888-3821043)
[»] chr1 (1 HSPs)
chr1 (1-320)||(16699882-16700203)
[»] chr2 (1 HSPs)
chr2 (1-321)||(29273127-29273427)


Alignment Details
Target: chr4 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 55861451 - 55861129
Alignment:
Q  1 tgtaggaggggttatttgcgctagatccaactcttccatggtt-gttttaatttggggatttatgtcggtttttctattatttttcgaaagctgctccaa 99  Q
    ||||||||||||| ||||||||||||||||||| |  ||||   ||| |  |||||||||||||||| |||| | | ||||  ||| ||||||||| |||    
T  55861451 tgtaggaggggttgtttgcgctagatccaactccttgatggcccgttcttctttggggatttatgtcagtttctgtgttataattcaaaagctgcttcaa 55861352  T
Q  100 gaagacttctttgtatggatttctcgcgcgttcgcgatgttaatacggattttgcagagattgtagttggatttgtcaaataatggggccgttacttgaa 199  Q
    |||||||||||||||||  ||| |||||||||| ||| ||| ||||||||| |||||||||| ||||||||||||||| |||||||||||| ||||||||    
T  55861351 gaagacttctttgtatgactttttcgcgcgttcccgacgttcatacggattgtgcagagattttagttggatttgtcagataatggggccggtacttgaa 55861252  T
Q  200 caa-tttccggcggtacttcaattcgggtccataatttctctgtggtggggttggttttacctttcattttatatgggttttgtcttcatttgttgattg 298  Q
     || ||||| |  || |||||||||||||||||||||||| ||||||||||||   ||| ||||||||||| |||||||||||||||| |||||||||||    
T  55861251 gaattttccagttgtccttcaattcgggtccataatttctttgtggtggggttatatttgcctttcattttgtatgggttttgtcttcttttgttgattg 55861152  T
Q  299 cagttttattttgttgctggtgg 321  Q
    ||||||| |||||||| ||||||    
T  55861151 cagttttgttttgttgttggtgg 55861129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 202 - 357
Target Start/End: Original strand, 3820888 - 3821043
Alignment:
Q  202 atttccggcggtacttcaattcgggtccataatttctctgtggtggggttggttttacctttcattttatatgggttttgtcttcatttgttgattgcag 301  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  3820888 atttcgggcggtacttcaattcgggtccataatttctctgtggtggggttggttttacctttcattttatatggattttgtcttcttttgttgattgcag 3820987  T
Q  302 ttttattttgttgctggtggtgcctgattgtcgtgatattgttctctgtggtgctg 357  Q
    |||||||||||||||||||||| |||||||| ||||||||||||| || |||||||    
T  3820988 ttttattttgttgctggtggtgtctgattgtggtgatattgttctgtgcggtgctg 3821043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 16699882 - 16700203
Alignment:
Q  1 tgtaggaggggttatttgcgctagatccaactcttccatggttgttttaatttggggatttatgtcggtttttctattatttttcgaaagctgctccaag 100  Q
    |||||||||||| ||||||||||||||||||||  |||||| || ||| |||| || ||||||||||| || | ||||||  ||| |||||| |  ||||    
T  16699882 tgtaggaggggtgatttgcgctagatccaactccaccatgggtggtttgatttaggaatttatgtcggattgtgtattataattcaaaagctacctcaag 16699981  T
Q  101 aagacttctttgtatggatttctcgcgcgttcgcgatgttaatacggattttg--cagagattgtagttggatttgtcaaataatggggccgttacttga 198  Q
    |||||||   || |||| ||| |||||||||| |||||||||||| |||| ||  ||  ||||||||||||||||||||  ||||||| ||| |||||||    
T  16699982 aagactttgctggatggctttttcgcgcgttcccgatgttaatacagattgtgtgcatggattgtagttggatttgtcaggtaatgggaccgatacttga 16700081  T
Q  199 acaatttccggcggtacttcaattcgggtccataatttctctgtggtggggttggttttacctttcattttatatgggttttgtcttcatttgttgattg 298  Q
    | |||||||| ||||||||| ||||||| | ||||||||||| |||||||||||| ||  |||||||||||||  |||||||||| || |||| ||||||    
T  16700082 aaaatttccgacggtacttcgattcgggacaataatttctctatggtggggttggattagcctttcattttattagggttttgtcatcttttgctgattg 16700181  T
Q  299 cagttttattttgttgctggtg 320  Q
    ||||||| |||||||| |||||    
T  16700182 cagttttgttttgttgttggtg 16700203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 29273127 - 29273427
Alignment:
Q  1 tgtaggaggggttatttgcgctagatccaactcttccatggtt-gttttaatttggggatttatgtcggtttttctattatttttcgaaagctgctccaa 99  Q
    ||||||||||||| ||||||||||||||||||| |  ||||   ||| |  |||||||||||||||| |||| | | ||||  ||| ||||||||| |||    
T  29273127 tgtaggaggggttgtttgcgctagatccaactccttgatggcccgttcttctttggggatttatgtcagtttctgtgttataattcaaaagctgcttcaa 29273226  T
Q  100 gaagacttctttgtatggatttctcgcgcgttcgcgatgttaatacggattttgcagagattgtagttggatttgtcaaataatggggccgttacttgaa 199  Q
    |||||||||||||||||| ||| |||||||||| ||| ||| ||||||||| |||||||||| ||||||||||||||| |||||||||||| ||||||      
T  29273227 gaagacttctttgtatggctttttcgcgcgttcccgacgttcatacggattgtgcagagattttagttggatttgtcagataatggggccggtacttg-- 29273324  T
Q  200 caatttccggcggtacttcaattcgggtccataatttctctgtggtggggttggttttacctttcattttatatgggttttgtcttcatttgttgattgc 299  Q
                       |||||||||||||||||||| |||||||||||| | ||| ||||||||||| |||||||||||||||| ||||||||||||    
T  29273325 -------------------aattcgggtccataatttctttgtggtggggttagatttgcctttcattttgtatgggttttgtcttcttttgttgattgc 29273405  T
Q  300 agttttattttgttgctggtgg 321  Q
    |||||  |||||||| ||||||    
T  29273406 agtttcgttttgttgttggtgg 29273427  T

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