View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4799_high_21 (Length: 310)
Name: NF4799_high_21
Description: NF4799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4799_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 1196667 - 1196444
Alignment:
| Q |
3 |
aattgttgagtttttgatatttgaatgtgtcttttgtaagttaatttggttcttaaatatatctttctttaatttatttagtacataaaattattagcaa |
102 |
Q |
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| T |
1196667 |
aattgttgagtttttgatatttgaatgtgtcttttgtaagttaatttggttcttaaatatatctttcgttaatttatttagtacataaaattattagcaa |
1196568 |
T |
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| Q |
103 |
aaggcatattcgaggatgctttaatttcggcacatttaagaaaatgatagtgacactgtcgcattcaaccaagcatcaaaatgcctatttacttcaaaaa |
202 |
Q |
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| T |
1196567 |
aaggcatattcgaggatgctttaatttcggcacatttaagaaaatgatagtgacactgtcgcattcaaccaagcatcaaaatgcctatttacttcaaaaa |
1196468 |
T |
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| Q |
203 |
taatgcatgagagtaagataaatg |
226 |
Q |
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|||||||||||||||||||||||| |
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| T |
1196467 |
taatgcatgagagtaagataaatg |
1196444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 300
Target Start/End: Complemental strand, 1196412 - 1196352
Alignment:
| Q |
245 |
ccctcccattcttgag-----tgagtttaattagatgtaagttaatccatttgagaattat |
300 |
Q |
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| T |
1196412 |
ccctcccattcttgagactaatgagtttaattagatgtaagttaatccatttgagaattat |
1196352 |
T |
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