View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4799_high_5 (Length: 351)
Name: NF4799_high_5
Description: NF4799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4799_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 340
Target Start/End: Original strand, 476460 - 476795
Alignment:
| Q |
7 |
tttggtgttcatggagtttcagaatccattttcatttgtcnnnnnnnggatccatttttattcaagtttagtgcttatgttt-gtaaaataaaagacaag |
105 |
Q |
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| T |
476460 |
tttggtgttcatggagtttcaggatccattttcatttgtcaaaaaaaggatccatttttattcaagtttagtgcttatgttttgtaaaataaaagacaaa |
476559 |
T |
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| Q |
106 |
attgctttcagggttcttttaagttattttgttgtagcatattagtcttttactttttattgttcaagtatgtcctttatctca--atatgtatttcgtt |
203 |
Q |
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| T |
476560 |
attactttcagggttcttt-aagttattttgttgtagcatattagtcttttactttttattgttcaagtatgtcctttatctcataatatgtatgtcgtt |
476658 |
T |
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| Q |
204 |
gacaatttttacaacttctgttacacgagcacctttataagtatggtgatgtagactaatgagtaatgacgctgatatgtcccgttttgcttgtttctgc |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
476659 |
gacaatttttacaacttctgttacacgagcacctttataagtatggtgatgtagactaatgagtaatgacgctgatatgtcccgttttgcttgtttctgc |
476758 |
T |
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| Q |
304 |
ggtgccttcttgcactgaatagaagctagaatatctt |
340 |
Q |
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||| |||||||| ||||||||||||||||||||||| |
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| T |
476759 |
tgtggcttcttgcgctgaatagaagctagaatatctt |
476795 |
T |
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