View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4799_high_6 (Length: 350)

Name: NF4799_high_6
Description: NF4799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4799_high_6
NF4799_high_6
[»] chr2 (4 HSPs)
chr2 (156-350)||(36050174-36050366)
chr2 (138-236)||(13437724-13437822)
chr2 (143-236)||(24412025-24412119)
chr2 (180-236)||(24407324-24407380)
[»] chr1 (3 HSPs)
chr1 (156-350)||(964614-964807)
chr1 (101-236)||(8753289-8753421)
chr1 (156-236)||(48713598-48713677)
[»] chr4 (8 HSPs)
chr4 (244-350)||(5695971-5696077)
chr4 (138-236)||(6686435-6686534)
chr4 (142-231)||(8532765-8532854)
chr4 (155-236)||(6683219-6683301)
chr4 (157-236)||(579935-580015)
chr4 (175-283)||(8532443-8532550)
chr4 (180-236)||(17538529-17538585)
chr4 (180-236)||(17539576-17539632)
[»] chr7 (4 HSPs)
chr7 (93-236)||(2435053-2435197)
chr7 (95-236)||(24509610-24509752)
chr7 (96-226)||(2432838-2432969)
chr7 (86-236)||(43697275-43697424)
[»] chr6 (3 HSPs)
chr6 (180-350)||(34237197-34237366)
chr6 (155-236)||(21182602-21182684)
chr6 (155-236)||(20758766-20758848)
[»] chr3 (2 HSPs)
chr3 (89-235)||(26362503-26362650)
chr3 (101-349)||(6240045-6240284)
[»] scaffold0211 (1 HSPs)
scaffold0211 (89-283)||(20805-20998)
[»] chr8 (6 HSPs)
chr8 (93-233)||(41279197-41279337)
chr8 (154-290)||(29275783-29275919)
chr8 (155-236)||(13274502-13274584)
chr8 (159-236)||(19385682-19385760)
chr8 (175-236)||(38061314-38061375)
chr8 (248-290)||(29261063-29261105)


Alignment Details
Target: chr2 (Bit Score: 126; Significance: 6e-65; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 156 - 350
Target Start/End: Original strand, 36050174 - 36050366
Alignment:
Q  156 gaagggtctgttaaattctgggggttagcgtataattacgcgaaaaatccttaagggcagtgcgatcagcacgtctcagacnnnnnnncaccgtttgttc 255  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||        ||||||||||||    
T  36050174 gaagggtctgttaaattctggggtttagcgtataattacgcaaaaaattcttaaggacagtgcgatcagcacgtctcaga-ttattttcaccgtttgttc 36050272  T
Q  256 attttgtagttctcttattgaattgatgtttagaggtatttgttgagctatgttggtggacaattctacaacaatttcaagacagataagtttat 350  Q
    ||||||||||||||||||||||||||||||||||||| ||  ||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  36050273 attttgtagttctcttattgaattgatgtttagaggtgttgattgagctatgtcggtggacaattctacaacaatttcaagaca-ataagtttat 36050366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 13437822 - 13437724
Alignment:
Q  138 tccttgattttatatcaagaagggtctgttaaattctgggggttagcgtataattacgcgaaaaatccttaagggcagtgcgatcagcacgtctcagac 236  Q
    ||||| |||| || || |||| |||||||||||| ||| || |||||||||||||||| | ||||||||||| | ||||||||| | ||| ||||||||    
T  13437822 tccttaatttcatgtcgagaatggtctgttaaatcctgaggattagcgtataattacgtggaaaatccttaaagacagtgcgattaacacatctcagac 13437724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 24412119 - 24412025
Alignment:
Q  143 gattttatatcaagaagggtctgttaaattctggggg-ttagcgtataattacgcgaaaaatccttaagggcagtgcgatcagcacgtctcagac 236  Q
    |||| |||||| |||||||||||||| ||| |||||| |||| | ||||||||||| ||||||| ||||| |||||| ||| |||| ||||||||    
T  24412119 gattctatatcgagaagggtctgttatattttgggggattagagcataattacgcgtaaaatccataaggacagtgccatcggcacatctcagac 24412025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 24407324 - 24407380
Alignment:
Q  180 ttagcgtataattacgcgaaaaatccttaagggcagtgcgatcagcacgtctcagac 236  Q
    |||||| ||||||||||  ||||||| ||||| |||||||||| |||||||||||||    
T  24407324 ttagcgcataattacgcagaaaatccataaggacagtgcgatcggcacgtctcagac 24407380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 156 - 350
Target Start/End: Original strand, 964614 - 964807
Alignment:
Q  156 gaagggtctgttaaattctgggggttagcgtataattacgcgaaaaatccttaagggcagtgcgatcagcacgtctcagacnnnnnnncaccgtttgttc 255  Q
    ||||| ||| |||||| |||| |||||||||||| ||| ||  ||||||||||||| ||||||||| ||||||||||||||       ||||||||||||    
T  964614 gaaggatctattaaatcctggaggttagcgtatatttatgcagaaaatccttaaggacagtgcgataagcacgtctcagactatttt-caccgtttgttc 964712  T
Q  256 attttgtagttctcttattgaattgatgtttagaggtatttgttgagctatgttggtggacaattctacaacaatttcaagacagataagtttat 350  Q
    ||||||||||||||||||||||||||||||||||||| ||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  964713 attttgtagttctcttattgaattgatgtttagaggtgttgattgagctatgtcggtggacaattctacaacaatttcaagacagataagtttat 964807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 236
Target Start/End: Complemental strand, 8753421 - 8753289
Alignment:
Q  101 catcttcctgaaagtattccttcatgccagttctccatccttgattttatatcaagaagggtctgttaaattctgggggttagcgtataattacgcgaaa 200  Q
    ||||||||||||| |||   ||| ||| |||||| |||||||||||||||||||| |||| ||||||||||  || || |||  ||||||||||||| ||    
T  8753421 catcttcctgaaaatata--ttcttgctagttctgcatccttgattttatatcaaaaagg-tctgttaaatcttgaggattaatgtataattacgcggaa 8753325  T
Q  201 aatccttaagggcagtgcgatcagcacgtctcagac 236  Q
    ||| ||||| | ||||| ||||||| ||||||||||    
T  8753324 aattcttaaagacagtgtgatcagctcgtctcagac 8753289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 48713677 - 48713598
Alignment:
Q  156 gaagggtctgttaaattctgggggttagcgtataattacgcgaaaaatccttaagggcagtgcgatcagcacgtctcagac 236  Q
    |||||||||||||||| |||||| |||||||||||| |||   ||||||||||| | ||||||||||| ||||||||||||    
T  48713677 gaagggtctgttaaatcctggggtttagcgtataatcacgtagaaaatccttaa-gacagtgcgatcaacacgtctcagac 48713598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 244 - 350
Target Start/End: Complemental strand, 5696077 - 5695971
Alignment:
Q  244 caccgtttgttcattttgtagttctcttattgaattgatgtttagaggtatttgttgagctatgttggtggacaattctacaacaatttcaagacagata 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| |||||| ||||| || |||||||||||||||||||||||||    
T  5696077 caccgtttgttcattttgtagttctcttattgaattgatgtttagaggtgttgattgaactatgtcggtggtcatttctacaacaatttcaagacagata 5695978  T
Q  344 agtttat 350  Q
    |||||||    
T  5695977 agtttat 5695971  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 6686435 - 6686534
Alignment:
Q  138 tccttgattttatatcaagaagggtctgttaaattctggggg-ttagcgtataattacgcgaaaaatccttaagggcagtgcgatcagcacgtctcagac 236  Q
    |||| |||| |||||  |||| |||||||||||| ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  6686435 tcctcgattatatattgagaatggtctgttaaatcctgggggattagcgtataattacgcggaaaatccttaaggacagtgcgatcagcacgtctcagac 6686534  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 8532854 - 8532765
Alignment:
Q  142 tgattttatatcaagaagggtctgttaaattctgggggttagcgtataattacgcgaaaaatccttaagggcagtgcgatcagcacgtct 231  Q
    ||||||||||||||||||| ||  ||||||  ||||| ||||||||||||||||||||||||| |||||| ||||| |||||||||||||    
T  8532854 tgattttatatcaagaaggatccattaaatcatggggattagcgtataattacgcgaaaaatcattaaggacagtgtgatcagcacgtct 8532765  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 6683219 - 6683301
Alignment:
Q  155 agaagggtctgttaaattctggggg-ttagcgtataattacgcgaaaaatccttaagggcagtgcgatcagcacgtctcagac 236  Q
    ||||| |||||| |||| |||| || |||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  6683219 agaagagtctgtgaaatcctggaggattagcgtataattacgcggaaaattcttaaggacagtgcgatcagcacgtctcagac 6683301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 580015 - 579935
Alignment:
Q  157 aagggtctgttaaattctggggg-ttagcgtataattacgcgaaaaatccttaagggcagtgcgatcagcacgtctcagac 236  Q
    ||||||| ||||||||||||||| ||| |||||||||||||| ||||||||||||  |||||||||||||| || ||||||    
T  580015 aagggtccgttaaattctgggggattaacgtataattacgcggaaaatccttaagaacagtgcgatcagcatgtttcagac 579935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 283
Target Start/End: Complemental strand, 8532550 - 8532443
Alignment:
Q  175 gggggttagcgtataattacgcgaaaaatccttaagggcagtgcgatcagcacgtctcagacnnnnnnncaccgtttgttcattttgtagttctcttatt 274  Q
    |||| |||||||||||||||||| ||||| ||||||| ||||||||||||||||||| | |        |||  ||||||||||||| ||||||||||||    
T  8532550 ggggattagcgtataattacgcggaaaattcttaaggacagtgcgatcagcacgtcttata-atactttcactatttgttcattttgcagttctcttatt 8532452  T
Q  275 gaattgatg 283  Q
    |||||||||    
T  8532451 gaattgatg 8532443  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 17538529 - 17538585
Alignment:
Q  180 ttagcgtataattacgcgaaaaatccttaagggcagtgcgatcagcacgtctcagac 236  Q
    |||||||||||||||||| ||||| ||||||  ||||||||||||||||||| ||||    
T  17538529 ttagcgtataattacgcggaaaatgcttaagcacagtgcgatcagcacgtcttagac 17538585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 17539576 - 17539632
Alignment:
Q  180 ttagcgtataattacgcgaaaaatccttaagggcagtgcgatcagcacgtctcagac 236  Q
    |||||||||||||||||| ||||| ||||||  ||||||||||||||||||| ||||    
T  17539576 ttagcgtataattacgcggaaaatgcttaagcacagtgcgatcagcacgtcttagac 17539632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 93 - 236
Target Start/End: Original strand, 2435053 - 2435197
Alignment:
Q  93 ttgggttacatcttcctgaaagtattccttcatgccagttctccatccttgattttatatcaagaagggtctgttaaattctggggg-ttagcgtataat 191  Q
    ||||||||||||||||||||| |||| |||| |||||||| |  ||| ||||||||| |||||||||||| ||||||||  |||||| ||| ||||||||    
T  2435053 ttgggttacatcttcctgaaaatatttcttcttgccagttatgtatctttgattttaaatcaagaagggtatgttaaatcttgggggattaacgtataat 2435152  T
Q  192 tacgcgaaaaatccttaagggcagtgcgatcagcacgtctcagac 236  Q
    |||||||||||||||||||   |||||||||||||||||| ||||    
T  2435153 tacgcgaaaaatccttaagaaaagtgcgatcagcacgtctaagac 2435197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 236
Target Start/End: Complemental strand, 24509752 - 24509610
Alignment:
Q  95 gggttacatcttcctgaaagtattccttcatgccagttctccatccttgattttatatcaagaagggtctgttaaattctggggg-ttagcgtataatta 193  Q
    |||| |||||||||||||| ||||  ||| || || || | |||| ||| ||||| |||||||||||| |||||||| ||||| | ||||||||||||||    
T  24509752 gggtaacatcttcctgaaaatattttttcttgtcaattatgcatctttggttttaaatcaagaagggtttgttaaatcctgggcgattagcgtataatta 24509653  T
Q  194 cgcgaaaaatccttaagggcagtgcgatcagcacgtctcagac 236  Q
    |||| ||||| ||||||| ||||||||||||||||||||||||    
T  24509652 cgcggaaaattcttaaggacagtgcgatcagcacgtctcagac 24509610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 96 - 226
Target Start/End: Original strand, 2432838 - 2432969
Alignment:
Q  96 ggttacatcttcctgaaagtattccttcatgccagttctccatccttgattttatatcaagaagggtctgttaaattctgg-gggttagcgtataattac 194  Q
    |||||||||||||||||| |||| |||| ||| |||| |  ||||||||||||| ||||||||  |||||||||||  ||| || |||||||||||||||    
T  2432838 ggttacatcttcctgaaaatatttcttcttgctagttatgtatccttgattttaaatcaagaaatgtctgttaaatcttggaggattagcgtataattac 2432937  T
Q  195 gcgaaaaatccttaagggcagtgcgatcagca 226  Q
    | | ||||||||||||| ||||| ||||||||    
T  2432938 gtggaaaatccttaaggacagtgtgatcagca 2432969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 236
Target Start/End: Original strand, 43697275 - 43697424
Alignment:
Q  86 aacaattttgggttacatcttcctgaaagtattccttcatgccagttctccatccttgattttatatcaagaagggtctgttaaattctggg-ggttagc 184  Q
    ||||| |||||||| | ||||||||||| |||| |||  ||||||||||  |||||  ||| || ||  |||||||| |||||||| ||||| |||||||    
T  43697275 aacaactttgggtttcttcttcctgaaa-tatttctttttgccagttctgtatcctccattcta-attgagaagggtttgttaaatcctgggcggttagc 43697372  T
Q  185 gtataattacgcgaaaaatccttaagggcagtgcgatcagcacgtctcagac 236  Q
     |||||||||| ||||||||||||||| ||  ||||||||||||||||||||    
T  43697373 atataattacgtgaaaaatccttaaggacaacgcgatcagcacgtctcagac 43697424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 180 - 350
Target Start/End: Complemental strand, 34237366 - 34237197
Alignment:
Q  180 ttagcgtataattacgcgaaaaatccttaagggcagtgcgatcagcacgtctcagacnnnnnnncaccgtttgttcattttgtagttctcttattgaatt 279  Q
    |||| ||||||||||||| ||||||||||||| |||||||||||  | |||||||||       ||| ||||||||||||||||||||||||||||||||    
T  34237366 ttagtgtataattacgcggaaaatccttaaggacagtgcgatcaatatgtctcagactatttt-cacggtttgttcattttgtagttctcttattgaatt 34237268  T
Q  280 gatgtttagaggtatttgttgagctatgttggtggacaattctacaacaatttcaagacagataagtttat 350  Q
     |||||||||||| ||  || |||||||| ||||| | ||||||||||||||| |||| |||||| |||||    
T  34237267 catgtttagaggtgttgattaagctatgtcggtggtctattctacaacaattttaagatagataaatttat 34237197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 21182684 - 21182602
Alignment:
Q  155 agaagggtctgttaaattctggggg-ttagcgtataattacgcgaaaaatccttaagggcagtgcgatcagcacgtctcagac 236  Q
    ||||||||||||||||| ||| ||| ||||||||||||||| ||||||||| |||||| || |||||||||||||||||||||    
T  21182684 agaagggtctgttaaatcctgagggattagcgtataattacacgaaaaatcattaaggacaatgcgatcagcacgtctcagac 21182602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 20758848 - 20758766
Alignment:
Q  155 agaagggtctgttaaattctggggg-ttagcgtataattacgcgaaaaatccttaagggcagtgcgatcagcacgtctcagac 236  Q
    |||||||||||||||||  |||||| |||||||||||  ||| | ||||| ||||||| ||||| ||||||||||||||||||    
T  20758848 agaagggtctgttaaatcttgggggattagcgtataaacacgtggaaaattcttaaggacagtgtgatcagcacgtctcagac 20758766  T

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Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 26362503 - 26362650
Alignment:
Q  89 aattttgggttacatcttcctgaaagtattccttcatgccagttctccatccttgattttatatcaagaagggtctgttaaattctg-ggggttagcgta 187  Q
    |||||||| | |||||||| ||||| ||||| ||| || || |||| ||||||||||||||||||||||||||||||||||||  || ||| ||||||||    
T  26362503 aattttggatcacatcttcttgaaaatattctttcttgtcatttctgcatccttgattttatatcaagaagggtctgttaaatcatgagggattagcgta 26362602  T
Q  188 taattacgcgaaaaatccttaagggcagtgcgatcagcacgtctcaga 235  Q
    |||||| ||||||||||||||||| || ||||||||| || |||||||    
T  26362603 taattatgcgaaaaatccttaaggacaatgcgatcagtacatctcaga 26362650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 101 - 349
Target Start/End: Complemental strand, 6240284 - 6240045
Alignment:
Q  101 catcttcctgaaagtattccttcatgccagttctccatccttgattttatatcaagaagggtctgttaaattctgggggttagcgtataattacgcgaaa 200  Q
    ||||||||||||| | ||||||| ||| | |||| |||||||| ||||| | |||| ||||| |||||        || |||| ||||||||| ||| ||    
T  6240284 catcttcctgaaaattttccttcttgcgacttctgcatccttggttttaaaccaagcagggtatgtta--------ggattagagtataattaagcggaa 6240193  T
Q  201 aatccttaagggcagtgcgatcagcacgtctcagacnnnnnnncaccgtttgttcattttgtagttctcttattgaattgatgtttagaggtatttgttg 300  Q
    ||||||||| | ||||| |||||||| |||||||||       |||||||||||||| ||| |||||||||||  ||||| |||||| || | ||  |||    
T  6240192 aatccttaaagacagtgtgatcagcatgtctcagactacttc-caccgtttgttcatgttgcagttctcttatcaaattggtgtttaaagatgttgattg 6240094  T
Q  301 agctatgttggtggacaattctacaacaatttcaagacagataagttta 349  Q
    |  ||||| | ||| ||||||||||||||| ||||||||||||||||||    
T  6240093 aattatgtagatggtcaattctacaacaatatcaagacagataagttta 6240045  T

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Target: scaffold0211 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 283
Target Start/End: Complemental strand, 20998 - 20805
Alignment:
Q  89 aattttgggttacatcttcctgaaagtattccttcatgccagttctccatccttgattttatatcaagaagggtctgttaaattctgg-gggttagcgta 187  Q
    ||||||||||||||||||||| ||| || |  ||| ||| | || | ||||||||||||||||| |||||||||||||||||| |||| || ||||| ||    
T  20998 aattttgggttacatcttcctaaaa-tagttattcttgctaattttgcatccttgattttatattaagaagggtctgttaaatcctggaggattagcata 20900  T
Q  188 taattacgcgaaaaatccttaagggcagtgcgatcagcacgtctcagacnnnnnnncaccgtttgttcattttgtagttctcttattgaattgatg 283  Q
    |||||||||  |||||  ||||||  |||||||||| ||||||||| ||       |||  ||||||||||||| |||||||||||||||||||||    
T  20899 taattacgcagaaaatttttaaggatagtgcgatcaacacgtctcatac-tactttcactatttgttcattttggagttctcttattgaattgatg 20805  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 41279337 - 41279197
Alignment:
Q  93 ttgggttacatcttcctgaaagtattccttcatgccagttctccatccttgattttatatcaagaagggtctgttaaattctggg-ggttagcgtataat 191  Q
    ||||||||||||||||||||| |||| |||  ||||||||||  ||| ||||||||| |||||||||  | ||||||||| |||| | ||||||||| |     
T  41279337 ttgggttacatcttcctgaaaatatttcttattgccagttctgtatctttgattttaaatcaagaagaatatgttaaattttgggagattagcgtatta- 41279239  T
Q  192 tacgcgaaaaatccttaagggcagtgcgatcagcacgtctca 233  Q
    ||||||||| |||||||| |  |||||||||||| |||||||    
T  41279238 tacgcgaaatatccttaaagatagtgcgatcagcgcgtctca 41279197  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 290
Target Start/End: Original strand, 29275783 - 29275919
Alignment:
Q  154 aagaagggtctgttaaattctggggg-ttagcgtataattacgcgaaaaatccttaagggcagtgcgatcagcacgtctcagacnnnnnnncaccgtttg 252  Q
    ||||||| || |||||||||| |||| |||||||||||| ||||| ||||||||||| |  |||||||| ||||||||||||||       ||| |||||    
T  29275783 aagaaggatcggttaaattctaggggattagcgtataatcacgcggaaaatccttaaagatagtgcgattagcacgtctcagac-tacttccactgtttg 29275881  T
Q  253 ttcattttgtagttctcttattgaattgatgtttagag 290  Q
    ||||||||| | |||||||||  |||||||||||||||    
T  29275882 ttcattttgcaattctcttatcaaattgatgtttagag 29275919  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 236
Target Start/End: Complemental strand, 13274584 - 13274502
Alignment:
Q  155 agaagggtctgttaaattctggggg-ttagcgtataattacgcgaaaaatccttaagggcagtgcgatcagcacgtctcagac 236  Q
    |||||||| ||||| || || |||| ||| |||||||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  13274584 agaagggtatgttatatcctaggggattaacgtataattacgcggaaaatctttaaggacagtgcgatcagcacgtctcagac 13274502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 19385760 - 19385682
Alignment:
Q  159 gggtctgttaaattctggggg-ttagcgtataattacgcgaaaaatccttaagggcagtgcgatcagcacgtctcagac 236  Q
    |||||||||||||  |||||| |||||||||||||||| |||||||| | ||||  |||||||||||||||||||||||    
T  19385760 gggtctgttaaatcttggggggttagcgtataattacgtgaaaaatcatgaaggatagtgcgatcagcacgtctcagac 19385682  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 38061314 - 38061375
Alignment:
Q  175 gggggttagcgtataattacgcgaaaaatccttaagggcagtgcgatcagcacgtctcagac 236  Q
    |||| |||||||||||||||||| ||||||||||||| ||||  ||||||||||||||||||    
T  38061314 ggggattagcgtataattacgcggaaaatccttaaggacagtttgatcagcacgtctcagac 38061375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 290
Target Start/End: Original strand, 29261063 - 29261105
Alignment:
Q  248 gtttgttcattttgtagttctcttattgaattgatgtttagag 290  Q
    |||||||||||||||| |||||||||  |||||||||||||||    
T  29261063 gtttgttcattttgtaattctcttatcaaattgatgtttagag 29261105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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