View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4799_high_7 (Length: 341)
Name: NF4799_high_7
Description: NF4799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4799_high_7 |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 4377186 - 4376859
Alignment:
| Q |
1 |
gttgcgacattgccaatttcatttactttagaatcaaatactagcatgatgcatttaatttggtcgatatatatttggttgacagtggctgcatttatgt |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4377186 |
gttgcgacattgccaatttcatttaatttagaatcaaatactagcatgatgcatttaatttggtcgatatatatttggttgacagtggctgcatttatgt |
4377087 |
T |
|
| Q |
101 |
taaatggattaaaatagcacatatctttgaaatctttcagtagcatttgattttagtgttgactttgtatttgagtgcttacatttaacatgaataggat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||| |
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| T |
4377086 |
taaatggattaaaatagcacatatctttgaaatctttcagtagcatttgattttagtgttgactctgtgtttgagtgcttacatttaacgtgaataggat |
4376987 |
T |
|
| Q |
201 |
tacatataggccagggattggttttgttgcctaacactactagatgtcatagctttggacaaannnnnnnnnnnnnncttgttacatattggcagcccaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
4376986 |
tacatataggccagggattggttttgttgcctaacactactagatgtcatagctttggacaaa-----tatttttttcttgttacatattggcagctcaa |
4376892 |
T |
|
| Q |
301 |
ttgactaaaattttggctatctttgtctgtggt |
333 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
4376891 |
ttgactaaaattttggctatctttgtctctggt |
4376859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 30654589 - 30654654
Alignment:
| Q |
198 |
gattacatataggccagggattggttttgttgcctaacactactagatgtcatagctttggacaaa |
263 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||| ||||||| | ||||||||||| |
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| T |
30654589 |
gattacatatagatcagggattagttttgttgcctaacactactcgatgtcaaacctttggacaaa |
30654654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 19933828 - 19933864
Alignment:
| Q |
151 |
ttttagtgttgactttgtatttgagtgcttacattta |
187 |
Q |
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||||||||||| |||||| |||||||||||||||||| |
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| T |
19933828 |
ttttagtgttggctttgtgtttgagtgcttacattta |
19933864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 8834738 - 8834476
Alignment:
| Q |
1 |
gttgcgacattgccaatttcatttactttagaatcaaatactagcatgatgcatttaatttggtcgatatatatttggttgacagtggctgcatttatgt |
100 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||| ||| |
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| T |
8834738 |
gttgcgacattgccaatttcatttaatttggaatcaaatactagcatgttgcatttaatttggtcgatatatattaggttgagagtggctgcatttttgt |
8834639 |
T |
|
| Q |
101 |
taaatggattaaaatagcacatatctttgaaatctttcagtagcatttgattttagtgttgactttgtatttgagtgcttacatttaacatgaataggat |
200 |
Q |
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|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
8834638 |
taaatggattaaaatagcgcatatctttgaagtctttcagtagcatttgattttagtgttgactctgtgtttgagtgcttacatttaacatgaataggat |
8834539 |
T |
|
| Q |
201 |
tacatataggccagggattggttttgttgcctaacactactagatgtcatagctttggacaaa |
263 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8834538 |
tacatataggccagggattaattttgttgcctaacactactagatgtcatagctttggacaaa |
8834476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 15437620 - 15437538
Alignment:
| Q |
81 |
gacagtggctgcatttatgttaaatggattaaaatagcacatatctttgaaatctttcagtagcatttgattttagtgttgact |
164 |
Q |
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| T |
15437620 |
gacagtggctgcatttctgttaaatggattaaaatagcacata-ctttgaaatctttcagtagcatttgattttagtgttgact |
15437538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 15528924 - 15528842
Alignment:
| Q |
81 |
gacagtggctgcatttatgttaaatggattaaaatagcacatatctttgaaatctttcagtagcatttgattttagtgttgact |
164 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15528924 |
gacagtggctgcatttctgttaaatggattaaaatagcacata-ctttgaaatctttcagtagcatttgattttagtgttgact |
15528842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 36 - 263
Target Start/End: Original strand, 7078 - 7306
Alignment:
| Q |
36 |
aaatactagcatgatgcatttaatttggtcgatatatatttggttgacagtggctgcatttat-gttaaatggattaaaatagcacatatctttgaaatc |
134 |
Q |
| |
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||||||||||||| ||||||||||||||| |||||||||| | |||| ||||||||||| | ||||||||||||||||||| |||||||||||||||| |
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| T |
7078 |
aaatactagcatgttgcatttaatttggttgatatatattacctagacactggctgcattttttgttaaatggattaaaatagaacatatctttgaaatc |
7177 |
T |
|
| Q |
135 |
tttcagtagcatttgattttagtgttgactttgtatttgagtgcttacatttaacatgaataggattacatataggccagggattggttttgttgcctaa |
234 |
Q |
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|||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| ||||||||||||| ||||||| || ||||||| ||| |
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| T |
7178 |
tttcagtagcatttgattttagtgttgactctgtgtttgagtgcttacatttagcatgaataagattacatataggttagggattagtgttgttgcataa |
7277 |
T |
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| Q |
235 |
cactactagatgtcatagctttggacaaa |
263 |
Q |
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||||| ||||||||| ||||||||||||| |
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| T |
7278 |
cactattagatgtcacagctttggacaaa |
7306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 36 - 263
Target Start/End: Original strand, 20532 - 20760
Alignment:
| Q |
36 |
aaatactagcatgatgcatttaatttggtcgatatatatttggttgacagtggctgcatttat-gttaaatggattaaaatagcacatatctttgaaatc |
134 |
Q |
| |
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||||||||||||| ||||||||||||||| |||||||||| | |||| ||||||||||| | ||||||||||||||||||| |||||||||||||||| |
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| T |
20532 |
aaatactagcatgttgcatttaatttggttgatatatattacctagacactggctgcattttttgttaaatggattaaaatagaacatatctttgaaatc |
20631 |
T |
|
| Q |
135 |
tttcagtagcatttgattttagtgttgactttgtatttgagtgcttacatttaacatgaataggattacatataggccagggattggttttgttgcctaa |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||| ||||||||||||| ||||||| || ||||||| ||| |
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| T |
20632 |
tttcagtagcatttgattttagtgttgactctgtgtttgagtgcttacatttagcatgaataagattacatataggttagggattagtgttgttgcataa |
20731 |
T |
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| Q |
235 |
cactactagatgtcatagctttggacaaa |
263 |
Q |
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||||| ||||||||| ||||||||||||| |
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| T |
20732 |
cactattagatgtcacagctttggacaaa |
20760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 81 - 164
Target Start/End: Original strand, 30936226 - 30936309
Alignment:
| Q |
81 |
gacagtggctgcatttatgttaaatggattaaaatagcacatatctttgaaatctttcagtagcatttgattttagtgttgact |
164 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
30936226 |
gacagtggctgcatttatattaaatggattaaaatagaacatatctttgaagtctttcagtagcatttgattttagtgttgact |
30936309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 22589430 - 22589347
Alignment:
| Q |
81 |
gacagtggctgcatttatgttaaatggattaaaatagcacatatctttgaaatctttcagtagcatttgattttagtgttgact |
164 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22589430 |
gacagtggctgcatttatgttaaatggattcaaatagaacatatctttgaagtctttcagtagcatttgattttagtgttgact |
22589347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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