View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4799_high_9 (Length: 332)
Name: NF4799_high_9
Description: NF4799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4799_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 330
Target Start/End: Original strand, 8899252 - 8899570
Alignment:
| Q |
11 |
cacagaagcagaatcagtcgattggttgcaaggaaaattgtcttctgtcgcaattttaaggttgctttgtgcggatgttgtattttggagaggcctgcta |
110 |
Q |
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| T |
8899252 |
cacagaagcagaatcagtcgattggctgcgaggaaaattgtcttctgtcgcaattttaaggttactttgtgcagatgttgtattttggagaggcctgcta |
8899351 |
T |
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| Q |
111 |
atctgtataaataacatacgacagagattaaaacaagcacaagtacatatatgataaatttctaggacacagtcagagaaggaaatacataaagnnnnnn |
210 |
Q |
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| T |
8899352 |
atctgtataaataacatacgacagagattaaaacaagcacaagtacatatatgataaatttctaggacacagtcagagaaggaaatacataaag-aaaaa |
8899450 |
T |
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| Q |
211 |
nnngattcagaaatatgacatacaacgtgctttctccagacatgctgccataagttcgtaagctcattcttccgaacaggtttgataagaaaatcagctg |
310 |
Q |
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| T |
8899451 |
aaagatccagaaatatgacatacaacgtgctttctccagacatgctgccataagttcgtaagctcattcttccgaacaggtttgataagaaaatcagctg |
8899550 |
T |
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| Q |
311 |
cacctctacacatgcacttc |
330 |
Q |
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| T |
8899551 |
cacctctacacatgcacttc |
8899570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 305
Target Start/End: Complemental strand, 49082766 - 49082703
Alignment:
| Q |
242 |
ttctccagacatgctgccataagttcgtaagctcattcttccgaacaggtttgataagaaaatc |
305 |
Q |
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| T |
49082766 |
ttctccacacatgctgccacaagttcctaagctcattcctgcgaactggtttaatgagaaaatc |
49082703 |
T |
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