View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4800-Insertion-2 (Length: 690)

Name: NF4800-Insertion-2
Description: NF4800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4800-Insertion-2
NF4800-Insertion-2
[»] chr4 (21 HSPs)
chr4 (8-690)||(32439333-32440020)
chr4 (39-130)||(7259772-7259863)
chr4 (39-120)||(48215730-48215811)
chr4 (31-131)||(2402916-2403015)
chr4 (54-128)||(4965119-4965193)
chr4 (92-162)||(37061940-37062010)
chr4 (39-143)||(24993277-24993381)
chr4 (50-126)||(35415713-35415789)
chr4 (44-131)||(44434012-44434099)
chr4 (18-129)||(44434019-44434129)
chr4 (86-131)||(1913953-1913998)
chr4 (84-147)||(36908421-36908484)
chr4 (76-126)||(8037890-8037940)
chr4 (86-140)||(30508786-30508840)
chr4 (93-147)||(42077591-42077645)
chr4 (92-125)||(38673101-38673134)
chr4 (87-140)||(45105614-45105667)
chr4 (90-147)||(48334185-48334242)
chr4 (87-135)||(26910699-26910747)
chr4 (86-134)||(35196748-35196796)
chr4 (73-121)||(40156648-40156696)
[»] chr3 (9 HSPs)
chr3 (40-129)||(9174102-9174191)
chr3 (59-131)||(35570593-35570665)
chr3 (39-126)||(21452774-21452861)
chr3 (39-126)||(21457948-21458035)
chr3 (93-141)||(53669607-53669655)
chr3 (40-121)||(49828171-49828252)
chr3 (92-164)||(34816684-34816756)
chr3 (92-140)||(35508424-35508472)
chr3 (76-124)||(53950249-53950297)
[»] chr7 (13 HSPs)
chr7 (37-141)||(26387621-26387725)
chr7 (86-133)||(36207443-36207490)
chr7 (72-134)||(30863574-30863636)
chr7 (95-131)||(17480390-17480426)
chr7 (95-131)||(17572788-17572824)
chr7 (86-147)||(3265341-3265402)
chr7 (39-104)||(5793813-5793878)
chr7 (40-164)||(7359253-7359377)
chr7 (95-131)||(17484827-17484863)
chr7 (95-131)||(17568351-17568387)
chr7 (92-164)||(44184019-44184091)
chr7 (86-126)||(44972064-44972104)
chr7 (90-126)||(48211426-48211462)
[»] chr5 (12 HSPs)
chr5 (40-140)||(32077895-32077995)
chr5 (40-147)||(32746311-32746418)
chr5 (44-131)||(34873519-34873606)
chr5 (87-140)||(35363636-35363689)
chr5 (40-164)||(35503523-35503647)
chr5 (41-124)||(20919570-20919653)
chr5 (37-131)||(26995172-26995264)
chr5 (100-147)||(36880059-36880106)
chr5 (76-135)||(37866920-37866979)
chr5 (48-122)||(9474857-9474931)
chr5 (87-148)||(29048627-29048688)
chr5 (40-124)||(20906289-20906373)
[»] chr2 (2 HSPs)
chr2 (51-140)||(16427802-16427891)
chr2 (88-131)||(12516674-12516717)
[»] chr1 (10 HSPs)
chr1 (92-147)||(24855173-24855228)
chr1 (87-141)||(42048467-42048521)
chr1 (86-131)||(16910050-16910095)
chr1 (86-131)||(35097256-35097301)
chr1 (87-147)||(1765556-1765616)
chr1 (92-147)||(11330932-11330987)
chr1 (92-147)||(11488953-11489008)
chr1 (92-147)||(41910028-41910083)
chr1 (73-147)||(50302578-50302652)
chr1 (72-141)||(40491138-40491207)
[»] chr6 (3 HSPs)
chr6 (93-147)||(34707434-34707488)
chr6 (86-131)||(18688972-18689017)
chr6 (76-132)||(26472679-26472735)
[»] scaffold0002 (1 HSPs)
scaffold0002 (40-125)||(427594-427679)
[»] chr8 (3 HSPs)
chr8 (86-141)||(6913359-6913414)
chr8 (86-116)||(9280599-9280629)
chr8 (39-129)||(10658614-10658704)
[»] scaffold0204 (1 HSPs)
scaffold0204 (90-147)||(21707-21764)


Alignment Details
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 8 - 690
Target Start/End: Complemental strand, 32440020 - 32439333
Alignment:
Q  8 taatgatgacgagttgatagtcgaaaataatttttgcacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgaca 107  Q
    ||||| |||| ||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  32440020 taatggtgacaagttgatagtcgaaaataatttttgcatacacaaccaatcaaaacattatgagttgtcacgtgaataaaaaatattaattgatgtgata 32439921  T
Q  108 attttaaatattttgattgattgtatgttcaaaactgtttcgcatcgtgaacccacccaatgttaaatgttttgaaaatgactgggatccactca----- 202  Q
    ||| ||||||||||||||||||| |||||||||||| ||||||||||| || |||||| |||||||||||||||||||||| |||| |||||| |         
T  32439920 attctaaatattttgattgattgcatgttcaaaactatttcgcatcgtcaatccacccgatgttaaatgttttgaaaatgattgggttccactaacccgt 32439821  T
Q  203 ---ttaaactcaaataaaaaatgtgagttagtaggatttttctatattaattnnnnnnnnnnnncaaatgaatatatagtaatttaaaagacgtttatat 299  Q
       ||||||||||||||||||||||| |||||||||||||| ||||||||||            ||||||||||||||||||||||||||||||||||||    
T  32439820 tctttaaactcaaataaaaaatgtgaattagtaggatttttgtatattaattaaaaaagaaaaacaaatgaatatatagtaatttaaaagacgtttatat 32439721  T
Q  300 tttaaaataattccttacaattaa-taactgagtaacatcaggaatttaatttttcgagaaatttaacttcaaattttgacagacataaaaatctgacaa 398  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32439720 tttaaaataattccttacaattaaataactgagtaacatcaggaatttaatttttcgagaaatttaacttcaaattttgatagacataaaaatctgacaa 32439621  T
Q  399 aactgttacgaatttggtgatgatcttgaatgaggattctgaaatctatctaatttcacgacgacgagtcagtagcagtcgctgctcgatacgctagtgt 498  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||||||||| ||||    
T  32439620 aactggtacgaatttggtgatgatcttgaatgaggattctgaaatctatctaatttcacgaaga---gtcagtagcagtcgctgctcgatacgctggtgt 32439524  T
Q  499 ccataacgggacgtttctgtcgctatctacaccaccccttttgttcaatttccaaacacattcgatctaacaatcaacaacatgaagctgcagcttcgaa 598  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32439523 ccataacgggacgtttctgtcgctatctacacccccccttttgttcaatttctaaacacattcgatctaacaatcaacaacatgaagctgcagcttcgaa 32439424  T
Q  599 tctttctcattcctctcctcctcgtgtttctcgccccactatcttcttcatcgaaagcccaaagacccatttctcggaatcgctccccaagg 690  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  32439423 tctttctcattcctctcctcctcgtgtttctcgccccattatcttcttcttcg-aagcccaaagacccatttctcggaatcgctccccaagg 32439333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 39 - 130
Target Start/End: Complemental strand, 7259863 - 7259772
Alignment:
Q  39 ttttgcacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattgattg 130  Q
    |||||||||| |||||||||||||  || ||| ||| ||||| ||| |||||||||||||||| |||||||| ||||| |||||||||||||    
T  7259863 ttttgcacacgcaatcaatcaaaatattttgaattgacacgtaaattaaaaatattaattgatatgacaattctaaatgttttgattgattg 7259772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 48215811 - 48215730
Alignment:
Q  39 ttttgcacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattt 120  Q
    ||||||||| ||||||||| ||||  |||| ||||||||| | ||||||||| ||||||||||| ||||||| |||||||||    
T  48215811 ttttgcacatacaatcaattaaaatattataagttgtcacataaataaaaaacattaattgatgcgacaattctaaatattt 48215730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 31 - 131
Target Start/End: Complemental strand, 2403015 - 2402916
Alignment:
Q  31 aaaataatttttgcacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattgattg 130  Q
    ||||||||||||  ||||| ||||||||||||| ||  || || |||  | ||| ||||||||| |||||||||||||||||||||||||| ||||||||    
T  2403015 aaaataatttttt-acacagaatcaatcaaaacattgagaattatcatataaattaaaaatatttattgatgtgacaattttaaatatttttattgattg 2402917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 4965193 - 4965119
Alignment:
Q  54 caatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattgat 128  Q
    ||||||||||||| | | ||| ||||| ||| || |||||||||||||||||| ||| |||||||||||||||||    
T  4965193 caatcaaaacgttctaaattgccacgtaaattaacaatattaattgatgtgacgattataaatattttgattgat 4965119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 37062010 - 37061940
Alignment:
Q  92 attaattgatgtgacaattttaaatattttgattgattgtatgttcaaaactgtttcgcatcgtgaaccca 162  Q
    ||||||||||||||||||| ||||| ||||||||| |||| ||| ||||||||||| | ||||| ||||||    
T  37062010 attaattgatgtgacaattctaaatgttttgattggttgtgtgtgcaaaactgttttgaatcgtcaaccca 37061940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 24993277 - 24993381
Alignment:
Q  39 ttttgcacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattgattgtatgttca 138  Q
    ||||||||||| ||||||||||||   ||||| ||| ||||| ||| ||||| ||||| ||||||||||||| ||||| |||| ||| ||| || || ||    
T  24993277 ttttgcacacataatcaatcaaaatactatgaattgccacgtaaattaaaaacattaaatgatgtgacaattctaaatgtttttattaattataggtgca 24993376  T
Q  139 aaact 143  Q
    |||||    
T  24993377 aaact 24993381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 35415713 - 35415789
Alignment:
Q  50 caatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattg 126  Q
    |||||||||||||| |||||| ||| ||||| ||| ||||| ||||||||||||||| ||| ||||| || ||||||    
T  35415713 caatcaatcaaaacattatgatttgacacgtaaattaaaaacattaattgatgtgacgattctaaatgttatgattg 35415789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 44 - 131
Target Start/End: Original strand, 44434012 - 44434099
Alignment:
Q  44 cacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattgattgt 131  Q
    |||||| ||||||||||||| ||| || ||| ||| | ||| ||||||||| ||| ||||||||| | ||||| ||||||||||||||    
T  44434012 cacacataatcaatcaaaacattaagaattgacacataaattaaaaatatttattaatgtgacaactctaaatgttttgattgattgt 44434099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 44434129 - 44434019
Alignment:
Q  18 gagttgatagtcgaaaataatttttgcacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaata 117  Q
    |||||||||||  |||| |||||  ||||||||||||||||||||| ||  |||||||||| | |||||| | | |||||| ||||| ||||| | |||     
T  44434129 gagttgatagttcaaaacaatttc-gcacacacaatcaatcaaaacatttagagttgtcacattaataaatatttttaatttatgtgtcaattcttaatg 44434031  T
Q  118 ttttgattgatt 129  Q
    ||||||||||||    
T  44434030 ttttgattgatt 44434019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 1913998 - 1913953
Alignment:
Q  86 aaaaatattaattgatgtgacaattttaaatattttgattgattgt 131  Q
    ||||| || |||||||||||||||| ||||||||||||||||||||    
T  1913998 aaaaacataaattgatgtgacaattataaatattttgattgattgt 1913953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 36908421 - 36908484
Alignment:
Q  84 taaaaaatattaattgatgtgacaattttaaatattttgattgattgtatgttcaaaactgttt 147  Q
    ||||||| |||||||||||||||||||   ||| |||||||||||||| ||| |||||| ||||    
T  36908421 taaaaaacattaattgatgtgacaattcagaatgttttgattgattgtttgtgcaaaacagttt 36908484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 8037890 - 8037940
Alignment:
Q  76 cacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattg 126  Q
    ||||| ||| ||||||||||||||||||| | ||| |||||||||||||||    
T  8037890 cacgtaaattaaaaatattaattgatgtggcgattctaaatattttgattg 8037940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 30508840 - 30508786
Alignment:
Q  86 aaaaatattaattgatgtgacaattttaaatattttgattgattgtatgttcaaa 140  Q
    ||||| |||||| |||||| ||||||||||| |||||||||||||| ||| ||||    
T  30508840 aaaaacattaatcgatgtggcaattttaaatgttttgattgattgtgtgtgcaaa 30508786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 93 - 147
Target Start/End: Complemental strand, 42077645 - 42077591
Alignment:
Q  93 ttaattgatgtgacaattttaaatattttgattgattgtatgttcaaaactgttt 147  Q
    ||||||||||||||||||| ||||||| |||||| |||| ||| ||||| |||||    
T  42077645 ttaattgatgtgacaatttaaaatattatgattggttgtgtgtacaaaattgttt 42077591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 125
Target Start/End: Complemental strand, 38673134 - 38673101
Alignment:
Q  92 attaattgatgtgacaattttaaatattttgatt 125  Q
    ||||||||||||||||||||||||| ||||||||    
T  38673134 attaattgatgtgacaattttaaatgttttgatt 38673101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 45105614 - 45105667
Alignment:
Q  87 aaaatattaattgatgtgacaattttaaatattttgattgattgtatgttcaaa 140  Q
    ||||||||||||||  |||||||| ||||||||||||||  |||||||| ||||    
T  45105614 aaaatattaattgacttgacaattataaatattttgatttgttgtatgtgcaaa 45105667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 48334242 - 48334185
Alignment:
Q  90 atattaattgatgtgacaattttaaatattttgattgattgtatgttcaaaactgttt 147  Q
    |||| ||||||||||| |||| ||||| |||||||||||||| |||  ||||||||||    
T  48334242 atataaattgatgtgataattataaatgttttgattgattgtgtgtggaaaactgttt 48334185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 26910747 - 26910699
Alignment:
Q  87 aaaatattaattgatgtgacaattttaaatattttgattgattgtatgt 135  Q
    |||| |||||| |||||||| ||||||||| | ||||||||||||||||    
T  26910747 aaaacattaatcgatgtgacgattttaaatgtcttgattgattgtatgt 26910699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 35196748 - 35196796
Alignment:
Q  86 aaaaatattaattgatgtgacaattttaaatattttgattgattgtatg 134  Q
    ||||| ||||||||||||| ||||| ||||| ||||||||| |||||||    
T  35196748 aaaaacattaattgatgtgtcaattctaaatgttttgattggttgtatg 35196796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 40156648 - 40156696
Alignment:
Q  73 tgtcacgtgaataaaaaatattaattgatgtgacaattttaaatatttt 121  Q
    |||||| | ||| ||||||||||||||||||| || |||||||||||||    
T  40156648 tgtcacataaattaaaaatattaattgatgtggcagttttaaatatttt 40156696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 129
Target Start/End: Original strand, 9174102 - 9174191
Alignment:
Q  40 tttgcacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattgatt 129  Q
    |||| ||||| ||||||||||||  || ||| ||||||| | ||||||||||||||||| ||||| | ||| ||||||||||||||||||    
T  9174102 tttgtacacataatcaatcaaaatattttgatttgtcacttaaataaaaaatattaattaatgtggcgattataaatattttgattgatt 9174191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 35570665 - 35570593
Alignment:
Q  59 aaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattgattgt 131  Q
    ||||| || ||| |||| |||| ||| ||||||||||||||||||| ||||||||||| ||||||||| ||||    
T  35570665 aaaacattttgaattgttacgtaaattaaaaatattaattgatgtggcaattttaaatgttttgattggttgt 35570593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 21452861 - 21452774
Alignment:
Q  39 ttttgcacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattg 126  Q
    |||||||||||||| |||||||||| || | | |||||| || ||| ||||| |||| |||||||||| ||||||||| || ||||||    
T  21452861 ttttgcacacacaaccaatcaaaacattctaatttgtcatgtaaattaaaaacattatttgatgtgacgattttaaatgttctgattg 21452774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 21458035 - 21457948
Alignment:
Q  39 ttttgcacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattg 126  Q
    |||||||||||||| |||||||||| || | | |||||| || ||| ||||| |||| |||||||||| ||||||||| || ||||||    
T  21458035 ttttgcacacacaaccaatcaaaacattctaatttgtcatgtaaattaaaaacattatttgatgtgacgattttaaatgttctgattg 21457948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 53669655 - 53669607
Alignment:
Q  93 ttaattgatgtgacaattttaaatattttgattgattgtatgttcaaaa 141  Q
    |||||| | ||||||||| |||||||||||||||||||| |||||||||    
T  53669655 ttaatttacgtgacaattctaaatattttgattgattgtgtgttcaaaa 53669607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 49828171 - 49828252
Alignment:
Q  40 tttgcacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatatttt 121  Q
    |||||||||||||||||| ||||  || ||| ||| ||||| ||| ||||| ||||||| || |||||||| ||||| ||||    
T  49828171 tttgcacacacaatcaattaaaatattttgaattgccacgtaaattaaaaacattaattcatatgacaattctaaatgtttt 49828252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 34816684 - 34816756
Alignment:
Q  92 attaattgatgtgacaattttaaatattttgattgattgtatgttcaaaactgtttcgcatcgtgaacccacc 164  Q
    ||||||||||||| |||||   ||| ||||||||| |||||||| ||||||||||| | | ||| ||||||||    
T  34816684 attaattgatgtggcaattcagaatgttttgattggttgtatgtgcaaaactgttttggaccgtcaacccacc 34816756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 35508424 - 35508472
Alignment:
Q  92 attaattgatgtgacaattttaaatattttgattgattgtatgttcaaa 140  Q
    ||||||||||||||||||| ||| | |||||||||||||| ||| ||||    
T  35508424 attaattgatgtgacaattctaattgttttgattgattgtgtgtacaaa 35508472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 53950297 - 53950249
Alignment:
Q  76 cacgtgaataaaaaatattaattgatgtgacaattttaaatattttgat 124  Q
    ||||| ||| ||||||||||||||||||   ||||||||||||||||||    
T  53950297 cacgtaaattaaaaatattaattgatgtagtaattttaaatattttgat 53950249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 37 - 141
Target Start/End: Original strand, 26387621 - 26387725
Alignment:
Q  37 atttttgcacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattgattgtatgtt 136  Q
    |||||| |||||||||||||||||||| ||   | ||| ||| | ||  ||||| ||||||||||||||||||||||||| ||||||||| |||| |||     
T  26387621 atttttacacacacaatcaatcaaaacattcaaaattgccacataaactaaaaacattaattgatgtgacaattttaaatgttttgattggttgtgtgtg 26387720  T
Q  137 caaaa 141  Q
    |||||    
T  26387721 caaaa 26387725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 86 - 133
Target Start/End: Complemental strand, 36207490 - 36207443
Alignment:
Q  86 aaaaatattaattgatgtgacaattttaaatattttgattgattgtat 133  Q
    ||||| ||||||||||||| |||||||||||||||||||| |||||||    
T  36207490 aaaaacattaattgatgtggcaattttaaatattttgatttattgtat 36207443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 30863636 - 30863574
Alignment:
Q  72 ttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattgattgtatg 134  Q
    ||||||||| ||| ||||| ||||||  || ||||||||||||||||||||| ||||||||||    
T  30863636 ttgtcacgtaaattaaaaacattaatcaatatgacaattttaaatattttgaatgattgtatg 30863574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 17480426 - 17480390
Alignment:
Q  95 aattgatgtgacaattttaaatattttgattgattgt 131  Q
    |||||||||||||||| ||||||||||||||||||||    
T  17480426 aattgatgtgacaattataaatattttgattgattgt 17480390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 17572788 - 17572824
Alignment:
Q  95 aattgatgtgacaattttaaatattttgattgattgt 131  Q
    |||||||||||||||| ||||||||||||||||||||    
T  17572788 aattgatgtgacaattataaatattttgattgattgt 17572824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 3265341 - 3265402
Alignment:
Q  86 aaaaatattaattgatgtgacaattttaaatattttgattgattgtatgttcaaaactgttt 147  Q
    ||||| ||||||||||||||||||| |||||||||| |||| || | ||| ||||| |||||    
T  3265341 aaaaacattaattgatgtgacaattctaaatattttaattggttatgtgtgcaaaattgttt 3265402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 5793813 - 5793878
Alignment:
Q  39 ttttgcacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtg 104  Q
    ||||||||||||||  ||||||||| || | | ||||||||| ||| |||||||||| ||||||||    
T  5793813 ttttgcacacacaacaaatcaaaacattttaaattgtcacgtaaattaaaaatattatttgatgtg 5793878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 40 - 164
Target Start/End: Complemental strand, 7359377 - 7359253
Alignment:
Q  40 tttgcacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattgattgtatgttcaa 139  Q
    |||||| |||||| |||||||||| || ||| |||||| || ||| ||||| ||||||||||||     |||||||| |||| ||||||||| ||  |||    
T  7359377 tttgcatacacaaccaatcaaaacattctgaattgtcatgtaaattaaaaacattaattgatgtagtggttttaaatgttttaattgattgtgtgcgcaa 7359278  T
Q  140 aactgtttcgcatcgtgaacccacc 164  Q
    |  ||||| | ||||| ||||||||    
T  7359277 agttgttttgaatcgtcaacccacc 7359253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 17484863 - 17484827
Alignment:
Q  95 aattgatgtgacaattttaaatattttgattgattgt 131  Q
    |||||||||||||||| |||||||||| |||||||||    
T  17484863 aattgatgtgacaattataaatattttaattgattgt 17484827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 17568351 - 17568387
Alignment:
Q  95 aattgatgtgacaattttaaatattttgattgattgt 131  Q
    |||||||||||||||| |||||||||| |||||||||    
T  17568351 aattgatgtgacaattataaatattttaattgattgt 17568387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 92 - 164
Target Start/End: Original strand, 44184019 - 44184091
Alignment:
Q  92 attaattgatgtgacaattttaaatattttgattgattgtatgttcaaaactgtttcgcatcgtgaacccacc 164  Q
    |||||||||||||||||||   ||| ||||||||| |||| ||| ||||||||||| | | ||| ||||||||    
T  44184019 attaattgatgtgacaattcagaatgttttgattggttgtgtgtgcaaaactgttttggaccgtcaacccacc 44184091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 44972104 - 44972064
Alignment:
Q  86 aaaaatattaattgatgtgacaattttaaatattttgattg 126  Q
    ||||||||||||||||||| ||||| | |||||||||||||    
T  44972104 aaaaatattaattgatgtggcaattctgaatattttgattg 44972064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 48211462 - 48211426
Alignment:
Q  90 atattaattgatgtgacaattttaaatattttgattg 126  Q
    |||||||||||| | ||||||||||||||||||||||    
T  48211462 atattaattgatataacaattttaaatattttgattg 48211426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 32077995 - 32077895
Alignment:
Q  40 tttgcacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattgattgtatgttcaa 139  Q
    |||||||||| ||||||||||||| |||||| || |||| | ||| ||||| | |||||||| ||  |||||||||| |||||||||||||| ||| |||    
T  32077995 tttgcacacaaaatcaatcaaaacattatgaattatcacataaattaaaaagagtaattgatttggtaattttaaatgttttgattgattgtgtgtgcaa 32077896  T
Q  140 a 140  Q
    |    
T  32077895 a 32077895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 32746311 - 32746418
Alignment:
Q  40 tttgcacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattgattgtatgttcaa 139  Q
    |||||||| ||||  ||||||||| ||  ||||||||| || ||| |||||||||||||||||||  |||| ||||| ||||||||| |||| ||| |||    
T  32746311 tttgcacatacaactaatcaaaacattcagagttgtcatgtaaattaaaaatattaattgatgtggaaattataaatgttttgattggttgtgtgtacaa 32746410  T
Q  140 aactgttt 147  Q
    || |||||    
T  32746411 aattgttt 32746418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 34873606 - 34873519
Alignment:
Q  44 cacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattgattgt 131  Q
    |||| |||| |||||||||| || ||| ||| ||||| |||  |||| ||||||||||||||| ||||||||| |||| |||||||||    
T  34873606 cacatacaaccaatcaaaacattctgaattgccacgtaaatttaaaacattaattgatgtgacgattttaaatgtttttattgattgt 34873519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 140
Target Start/End: Complemental strand, 35363689 - 35363636
Alignment:
Q  87 aaaatattaattgatgtgacaattttaaatattttgattgattgtatgttcaaa 140  Q
    |||||||||||||| |||| ||||||||||||||| |||| |||||||| ||||    
T  35363689 aaaatattaattgacgtgaaaattttaaatatttttattggttgtatgtacaaa 35363636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 164
Target Start/End: Complemental strand, 35503647 - 35503523
Alignment:
Q  40 tttgcacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattgattgtatgttcaa 139  Q
    |||| |||||||| |||||||||| |  | | ||||||| | ||| ||||||||||||||||||    ||||||||| |||||||||||| | ||| |||    
T  35503647 tttgtacacacaaacaatcaaaacatcctcaattgtcacataaattaaaaatattaattgatgtattgattttaaatgttttgattgattctgtgtgcaa 35503548  T
Q  140 aactgtttcgcatcgtgaacccacc 164  Q
    || ||||| | | ||| ||||||||    
T  35503547 aattgttttggaccgtcaacccacc 35503523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 20919653 - 20919570
Alignment:
Q  41 ttgcacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgat 124  Q
    ||||| |||||| |||||||||| || | | ||| ||||| ||| ||||| |||| |||||||||| ||| |||||||||||||    
T  20919653 ttgcatacacaaccaatcaaaacattttaaattgccacgtaaattaaaaacattatttgatgtgacgattctaaatattttgat 20919570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 131
Target Start/End: Original strand, 26995172 - 26995264
Alignment:
Q  37 atttttgcacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattgattgt 131  Q
    |||||||||||||||| |||  ||||| ||  || || |||| | ||| ||||||||||||||  ||||| |||||||||||||| |||||||||    
T  26995172 atttttgcacacacaaccaa--aaaacattcagaattctcacataaattaaaaatattaattggcgtgacgattttaaatattttaattgattgt 26995264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 36880059 - 36880106
Alignment:
Q  100 atgtgacaattttaaatattttgattgattgtatgttcaaaactgttt 147  Q
    |||||||||||| |||| |||||||||||||||||| ||||| |||||    
T  36880059 atgtgacaatttaaaatgttttgattgattgtatgtgcaaaattgttt 36880106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 37866979 - 37866920
Alignment:
Q  76 cacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattgattgtatgt 135  Q
    ||||| ||| ||||| ||||||| ||||||||||| |||||||||||||| ||| |||||    
T  37866979 cacgtaaattaaaaacattaattcatgtgacaattctaaatattttgattaattatatgt 37866920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 9474931 - 9474857
Alignment:
Q  48 cacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttg 122  Q
    ||||| |||||||||| |||||| |||  || | ||| |||||||||||| |||||||| ||||||||| |||||    
T  9474931 cacaaccaatcaaaacattatgaattgcaacataaattaaaaatattaatcgatgtgacgattttaaatgttttg 9474857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 29048627 - 29048688
Alignment:
Q  87 aaaatattaattgatgtgacaattttaaatattttgattgattgtatgttcaaaactgtttc 148  Q
    |||| ||||||||||||||  ||| ||||||||||||||| |||| ||| ||||| ||||||    
T  29048627 aaaacattaattgatgtgatgattataaatattttgattggttgtgtgtgcaaaattgtttc 29048688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 20906373 - 20906289
Alignment:
Q  40 tttgcacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgat 124  Q
    |||||| ||||||||||||||||  || | | ||| ||||| ||| |||||||||| |||| ||||| ||| ||||| |||||||    
T  20906373 tttgcatacacaatcaatcaaaatattttaaattgccacgtaaattaaaaatattatttgaagtgacgattctaaatgttttgat 20906289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 16427891 - 16427802
Alignment:
Q  51 aatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattgattgtatgttcaaa 140  Q
    ||||||||||||| ||  |||||| ||||| | | ||||| ||||||||||||| | ||| |||||||||||||||||||| ||| ||||    
T  16427891 aatcaatcaaaacattccgagttgccacgtaacttaaaaacattaattgatgtggcgattctaaatattttgattgattgtgtgtacaaa 16427802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 12516717 - 12516674
Alignment:
Q  88 aaatattaattgatgtgacaattttaaatattttgattgattgt 131  Q
    ||||||||||||||||||||||||||||| || |||||| ||||    
T  12516717 aaatattaattgatgtgacaattttaaatgttctgattggttgt 12516674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 24855173 - 24855228
Alignment:
Q  92 attaattgatgtgacaattttaaatattttgattgattgtatgttcaaaactgttt 147  Q
    ||||||||||||||||||||  ||||||||||||| |||||||| ||||| |||||    
T  24855173 attaattgatgtgacaatttagaatattttgattggttgtatgtgcaaaattgttt 24855228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 42048521 - 42048467
Alignment:
Q  87 aaaatattaattgatgtgacaattttaaatattttgattgattgtatgttcaaaa 141  Q
    |||||||||||||||||||| ||| ||||| | |||||||||||||||| |||||    
T  42048521 aaaatattaattgatgtgactattctaaatgtcttgattgattgtatgtgcaaaa 42048467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 16910095 - 16910050
Alignment:
Q  86 aaaaatattaattgatgtgacaattttaaatattttgattgattgt 131  Q
    ||||||||||||| ||||||| ||| ||||||||||||||||||||    
T  16910095 aaaaatattaatttatgtgacgattataaatattttgattgattgt 16910050  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 35097256 - 35097301
Alignment:
Q  86 aaaaatattaattgatgtgacaattttaaatattttgattgattgt 131  Q
    |||||||||||||||| || ||||||||||||||||||||| ||||    
T  35097256 aaaaatattaattgatatgtcaattttaaatattttgattggttgt 35097301  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 1765616 - 1765556
Alignment:
Q  87 aaaatattaattgatgtgacaattttaaatattttgattgattgtatgttcaaaactgttt 147  Q
    |||| ||||||||||||| |||| |||||| |||||||||||||| ||| ||||| |||||    
T  1765616 aaaaaattaattgatgtgtcaatattaaatgttttgattgattgtgtgtgcaaaattgttt 1765556  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 11330987 - 11330932
Alignment:
Q  92 attaattgatgtgacaattttaaatattttgattgattgtatgttcaaaactgttt 147  Q
    |||||||||| ||||||||  ||||||||||||||||||| | | |||||||||||    
T  11330987 attaattgatatgacaattcaaaatattttgattgattgtgtctgcaaaactgttt 11330932  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 11489008 - 11488953
Alignment:
Q  92 attaattgatgtgacaattttaaatattttgattgattgtatgttcaaaactgttt 147  Q
    |||||||||| ||||||||  ||||||||||||||||||| | | |||||||||||    
T  11489008 attaattgatatgacaattcaaaatattttgattgattgtgtctgcaaaactgttt 11488953  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 41910083 - 41910028
Alignment:
Q  92 attaattgatgtgacaattttaaatattttgattgattgtatgttcaaaactgttt 147  Q
    ||||| |||||||||||||  |||| |||||||||||||| ||| |||||||||||    
T  41910083 attaactgatgtgacaattcaaaatgttttgattgattgtgtgtccaaaactgttt 41910028  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 50302652 - 50302578
Alignment:
Q  73 tgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattgattgtatgttcaaaactgttt 147  Q
    |||||||| ||| ||||| |||||||||| |  | ||| |||||||||| ||||||||||||| ||||| |||||    
T  50302652 tgtcacgtaaattaaaaacattaattgattttgcgattataaatatttttattgattgtatgtgcaaaattgttt 50302578  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 40491207 - 40491138
Alignment:
Q  72 ttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattgattgtatgttcaaaa 141  Q
    ||||||| | ||| ||||| |||| ||||| ||| |||||||||||||||||||| |||| ||| |||||    
T  40491207 ttgtcacataaattaaaaacattatttgatatgataattttaaatattttgattggttgtgtgtgcaaaa 40491138  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 34707434 - 34707488
Alignment:
Q  93 ttaattgatgtgacaattttaaatattttgattgattgtatgttcaaaactgttt 147  Q
    ||||||||||||   ||| ||||| ||||||||||||||||||||||||||||||    
T  34707434 ttaattgatgtggtgattctaaatgttttgattgattgtatgttcaaaactgttt 34707488  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 18688972 - 18689017
Alignment:
Q  86 aaaaatattaattgatgtgacaattttaaatattttgattgattgt 131  Q
    ||||| ||||||||||||||||||||||||| ||||||||| ||||    
T  18688972 aaaaacattaattgatgtgacaattttaaatgttttgattggttgt 18689017  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 26472679 - 26472735
Alignment:
Q  76 cacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattgattgta 132  Q
    ||||| ||| ||||| ||||| |||||||||||||  |||| |||||||||||||||    
T  26472679 cacgtaaattaaaaacattaagtgatgtgacaattcaaaatgttttgattgattgta 26472735  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 125
Target Start/End: Complemental strand, 427679 - 427594
Alignment:
Q  40 tttgcacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgatt 125  Q
    |||||||||||||  ||||||||  ||  || ||||||| |  || ||||| ||||||||||||||||||||||||| ||||||||    
T  427679 tttgcacacacaactaatcaaaatattcagaattgtcacatatattaaaaacattaattgatgtgacaattttaaatgttttgatt 427594  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 6913359 - 6913414
Alignment:
Q  86 aaaaatattaattgatgtgacaattttaaatattttgattgattgtatgttcaaaa 141  Q
    |||||||||||||||| |  ||||| ||||||| |||||||||||||||| |||||    
T  6913359 aaaaatattaattgatttagcaattctaaatatgttgattgattgtatgtgcaaaa 6913414  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 86 - 116
Target Start/End: Complemental strand, 9280629 - 9280599
Alignment:
Q  86 aaaaatattaattgatgtgacaattttaaat 116  Q
    |||||||||||||||||||||||||||||||    
T  9280629 aaaaatattaattgatgtgacaattttaaat 9280599  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 129
Target Start/End: Complemental strand, 10658704 - 10658614
Alignment:
Q  39 ttttgcacacacaatcaatcaaaacgttatgagttgtcacgtgaataaaaaatattaattgatgtgacaattttaaatattttgattgatt 129  Q
    |||||||||||||| |||||||||| ||  || ||| ||||| ||| ||||| |||||||| |||||  | | ||||| ||||||||||||    
T  10658704 ttttgcacacacaaccaatcaaaacatttcgaattgacacgtaaattaaaaacattaattgttgtgatgaatctaaatgttttgattgatt 10658614  T

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Target: scaffold0204 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 21764 - 21707
Alignment:
Q  90 atattaattgatgtgacaattttaaatattttgattgattgtatgttcaaaactgttt 147  Q
    |||| ||||||||||| |||| ||||| |||||||||||||| |||  ||||||||||    
T  21764 atataaattgatgtgataattataaatgttttgattgattgtgtgtggaaaactgttt 21707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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