View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4800-Insertion-3 (Length: 685)

Name: NF4800-Insertion-3
Description: NF4800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4800-Insertion-3
NF4800-Insertion-3
[»] chr3 (7 HSPs)
chr3 (170-405)||(49926183-49926418)
chr3 (548-685)||(49927789-49927926)
chr3 (8-151)||(49926054-49926197)
chr3 (399-523)||(49927646-49927773)
chr3 (129-163)||(49233942-49233976)
chr3 (359-398)||(49926463-49926502)
chr3 (129-163)||(49234514-49234548)
[»] chr6 (1 HSPs)
chr6 (115-245)||(26842157-26842291)
[»] chr2 (2 HSPs)
chr2 (8-245)||(27638796-27639040)
chr2 (129-163)||(24455822-24455856)
[»] chr8 (1 HSPs)
chr8 (133-163)||(43228058-43228088)
[»] chr1 (2 HSPs)
chr1 (129-163)||(50862501-50862535)
chr1 (116-245)||(32149938-32150066)
[»] chr5 (1 HSPs)
chr5 (126-178)||(6700986-6701038)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-117; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 170 - 405
Target Start/End: Original strand, 49926183 - 49926418
Alignment:
Q  170 aaattatgcagaaaaaactaccaagaaaaacacctgattcagtcaatgttcgaactcctataggcagctcaatatatatttttatttgtttcatataagc 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49926183 aaattatgcagaaaaaactaccaagaaaaacacctgattcagtcaatgttcgaactcctataggcagctcaatatatatttttatttgtttcatataagc 49926282  T
Q  270 atatggtgatgaacaatttaattgtttcatannnnnnnactacaaacttaactgataggaaaagagaataacaatatacttatatttattatgaaattgc 369  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49926283 atatggtgatgaacaatttaattgtttcatatttttttactacaaacttaactgataggaaaagagaataacaatatacttatatttattatgaaattgc 49926382  T
Q  370 agtggagagaagcataaagagaagtatgactcaatt 405  Q
    ||||||||||||||||||||||||||||||||||||    
T  49926383 agtggagagaagcataaagagaagtatgactcaatt 49926418  T

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Target: chr3; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 548 - 685
Target Start/End: Original strand, 49927789 - 49927926
Alignment:
Q  548 ttgaagttgcgtccttacgataaacggctcctcgcaaaacaagcacttgtagcagtcatcaaagacattccattcgaaacaacctctcctccttccaatc 647  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49927789 ttgaagttgcgtccttacgataaacggctcctcgcaaaacaagcacttgtagcagtcatcaaagacattccattcgaaacaacctctcctccttccaatc 49927888  T
Q  648 tcatttggactcccgacgccgtcatcgaactcctccgt 685  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49927889 tcatttggactcccgacgccgtcatcgaactcctccgt 49927926  T

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Target: chr3; HSP #3
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 49926054 - 49926197
Alignment:
Q  8 catgctttctagaacacgcttatagaaacgccgctacattgcagcggcaatatcaaaacactttttctgcacaacagaagtccacaggctaaaaactgac 107  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  49926054 catgctttctagaacacgcttatagaaacgctgctacattgcagtggcaatattaaaacactttttctgcacaacagaagtccacaggctaaaaactgac 49926153  T
Q  108 tccaaactaaaattccttaaactcgctccaaattatgcagaaaa 151  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  49926154 tccaaactcaaattccttaaactcgctccaaattatgcagaaaa 49926197  T

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Target: chr3; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 399 - 523
Target Start/End: Original strand, 49927646 - 49927773
Alignment:
Q  399 ctcaatttatatcacatcatcttcaaaatgaaatatatcatctaacataaacaata---tcgataaaaacactcacataccataccccccacactctgaa 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  49927646 ctcaatttatatcacatcatcttcaaaatgaaatatatcatctaacataaacaataatatcgataaaaacactcacataccataccccccacactctgaa 49927745  T
Q  496 acaaaccgtattgtatcgtgtgttatgc 523  Q
    |||||||||||||||||||||| |||||    
T  49927746 acaaaccgtattgtatcgtgtgctatgc 49927773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 49233942 - 49233976
Alignment:
Q  129 ctcgctccaaattatgcagaaaattaccttgaacc 163  Q
    |||||||||||||||||||||||||||||||||||    
T  49233942 ctcgctccaaattatgcagaaaattaccttgaacc 49233976  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 398
Target Start/End: Original strand, 49926463 - 49926502
Alignment:
Q  359 tatgaaattgcagtggagagaagcataaagagaagtatga 398  Q
    ||||||||||||||| |||||| |||||||||||||||||    
T  49926463 tatgaaattgcagtgaagagaaacataaagagaagtatga 49926502  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 49234514 - 49234548
Alignment:
Q  129 ctcgctccaaattatgcagaaaattaccttgaacc 163  Q
    |||||||||||||||||| ||||||||||||||||    
T  49234514 ctcgctccaaattatgcataaaattaccttgaacc 49234548  T

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Target: chr6 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 115 - 245
Target Start/End: Complemental strand, 26842291 - 26842157
Alignment:
Q  115 taaaattccttaaactcgctccaaattatgcagaaaattaccttgaacctgccctaaattatgc----agaaaaaactaccaagaaaaacacctgattca 210  Q
    |||||| ||| |||||||||||||||||||||||||||||||||| ||| || | || ||||||    | ||||||| ||||||||||||||||||||||    
T  26842291 taaaatccctaaaactcgctccaaattatgcagaaaattaccttggaccagctccaagttatgcaaaaaaaaaaaacaaccaagaaaaacacctgattca 26842192  T
Q  211 gtcaatgttcgaactcctataggcagctcaatata 245  Q
    || || |||| |||||||||||||| |||||||||    
T  26842191 gtaaaagttcaaactcctataggcaactcaatata 26842157  T

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Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 27638796 - 27639040
Alignment:
Q  8 catgctttctagaacacgcttatagaaacgccgctacattgcagcggcaatatcaaaacactttttctgcacaacagaagtccacaggctaaaaactgac 107  Q
    |||||||||||||||||  |||||||||||||||||||||||||| | | |||||||||||||||| |||||||||| ||   ||| |||  ||||   |    
T  27638796 catgctttctagaacacctttatagaaacgccgctacattgcagctgtagtatcaaaacactttttttgcacaacagcagctgacaagctggaaacctgc 27638895  T
Q  108 tccaaact-------aaaattccttaaactcgctccaaattatgcagaaaattaccttgaacctgccctaaattatgcagaaaaaactaccaagaaaaac 200  Q
    | ||||||       ||||  | | | |||||||||||||||| ||| |||||||||||  || || | || ||||||||||||||| ||||||||||||    
T  27638896 tacaaactatgcaaaaaaaggcttcacactcgctccaaattattcagtaaattaccttgggccagctccaagttatgcagaaaaaacaaccaagaaaaac 27638995  T
Q  201 acctgattcagtcaatgttcgaactcctataggcagctcaatata 245  Q
    |||||| || || || |||| ||||| | ||||||| | ||||||    
T  27638996 acctgaatcggtaaaagttcaaactcttgtaggcagttgaatata 27639040  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 24455856 - 24455822
Alignment:
Q  129 ctcgctccaaattatgcagaaaattaccttgaacc 163  Q
    |||||||||||||||||||||||||||||||||||    
T  24455856 ctcgctccaaattatgcagaaaattaccttgaacc 24455822  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 133 - 163
Target Start/End: Complemental strand, 43228088 - 43228058
Alignment:
Q  133 ctccaaattatgcagaaaattaccttgaacc 163  Q
    |||||||||||||||||||||||||||||||    
T  43228088 ctccaaattatgcagaaaattaccttgaacc 43228058  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 50862535 - 50862501
Alignment:
Q  129 ctcgctccaaattatgcagaaaattaccttgaacc 163  Q
    ||||||||||||||||||||||| |||||||||||    
T  50862535 ctcgctccaaattatgcagaaaactaccttgaacc 50862501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 245
Target Start/End: Complemental strand, 32150066 - 32149938
Alignment:
Q  116 aaaattccttaaactcgctccaaattatgcagaaaattaccttgaacctgccctaaattatgcagaaaaaactaccaagaaaaacacctgattcagtcaa 215  Q
    ||||| ||| || ||| ||||||||||||||||| ||||| ||||||| || | |||||||||| ||| ||  || |||||||||| | |||||||| ||    
T  32150066 aaaatccctcaagctccctccaaattatgcagaacattacattgaaccagctccaaattatgca-aaagaaaaacaaagaaaaacatcagattcagtaaa 32149968  T
Q  216 tgttcgaactcctataggcagctcaatata 245  Q
     ||   ||||||| |||  |||||||||||    
T  32149967 agtggaaactcctgtagaaagctcaatata 32149938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 6701038 - 6700986
Alignment:
Q  126 aaactcgctccaaattatgcagaaaattaccttgaacctgccctaaattatgc 178  Q
    |||||| ||| ||||||||||||||||||| ||||||| || | |||||||||    
T  6701038 aaactccctctaaattatgcagaaaattacattgaaccagctccaaattatgc 6700986  T

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