View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4800-Insertion-7 (Length: 494)
Name: NF4800-Insertion-7
Description: NF4800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4800-Insertion-7 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 8 - 494
Target Start/End: Original strand, 3139593 - 3140080
Alignment:
| Q |
8 |
gtacaaactagggatagcaaactataccttgtgnnnnnnnnnn-atttggtgaaaagaaaagcttatatttaaaaagagnnnnnnnnncaaggattactg |
106 |
Q |
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| T |
3139593 |
gtacaaactagggatagcaaactataccttgtgtttttttttttatttggtgaaaagaaaagcttatatataaaaagagtttttttttcaaggattatat |
3139692 |
T |
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| Q |
107 |
agttctcgccaagaaaaagagttatttatttaaaaaatatttagagttaatgcaaatatctttatgaataaggaaaaaagatatatgatgcatattttgc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3139693 |
agttctcgccaagaaaaagagttatttatttaaaaaatatttagagttaatgcaaatatctttatgaataaggaaaaaagatatatgatgcatattttgc |
3139792 |
T |
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| Q |
207 |
tgttattatttgaattataattacaatagcaatgatgattgaaatttgaaacgatgtatggaaggtatacactgcttgatttgtgcctgaatatcattac |
306 |
Q |
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| T |
3139793 |
tgttattatttgaattataattacaatagcaataatgattgaaatttgaaacgatgtatggaaggtatgcactgcttgatttgtgcctgaatatcattac |
3139892 |
T |
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| Q |
307 |
cttcctaaactgatttaaattataatgcgtgtgtttaattactcaaatattctatattagatgagtggtattagtacaacacagttttgatgtacttcaa |
406 |
Q |
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| T |
3139893 |
cttcctaaactgatttaaactataatgcgtgtggttaattactcaaatattctatattagatgagtggtattagtacaacacagttttgatgtacttcaa |
3139992 |
T |
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| Q |
407 |
atttgatttcaaaccgagaagcaaatttggtaaattagaaataattacggatgtaattttggcttcatcaatgaatgatatatccata |
494 |
Q |
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| T |
3139993 |
atttgatttcaaaccgagaagcaaatttggtaaattagaaataattacggatgtaattttggcttcatcaatgaatgatatatccata |
3140080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 159 - 292
Target Start/End: Original strand, 3157513 - 3157646
Alignment:
| Q |
159 |
caaatatctttatgaataaggaaaaaagatatatgatgcatatt----ttgctgttattatttgaattataattacaatagcaatgatgattgaaatttg |
254 |
Q |
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| T |
3157513 |
caaatatctttatgaataaggaaagaa-atatctgatgcatattaattttact-ttattatttgaattataattacaatagctaagt--atcgaaagttt |
3157608 |
T |
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| Q |
255 |
aaacgatgtatggaaggtatacactgcttgatttgtgc |
292 |
Q |
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| T |
3157609 |
aaacgatgtatggaaggtatgcactgcttgatttgtgc |
3157646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 236
Target Start/End: Complemental strand, 3166840 - 3166756
Alignment:
| Q |
153 |
ttaatgcaaatatctttatgaataaggaaaaaagatatatgatgcatattttg--ctgttattatttgaattataattacaatagc |
236 |
Q |
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| T |
3166840 |
ttaatgcaaatatctttataaataaggaagcataa-atcacatgcatattttgtgctgttattatttgaattataattataatagc |
3166756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 2022425 - 2022377
Alignment:
| Q |
128 |
ttatttatttaaaaaatatttagagttaatgcaaatatctttatgaataa |
177 |
Q |
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| T |
2022425 |
ttatttattttaaaaatattt-gagttaatgtaaatatctttataaataa |
2022377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 247 - 321
Target Start/End: Complemental strand, 23851252 - 23851178
Alignment:
| Q |
247 |
gaaatttgaaacgatgtatggaaggtatacactgcttgatttgtgcctgaatatcattaccttcctaaactgatt |
321 |
Q |
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| T |
23851252 |
gaaagttgaaacgatgtatgacatgtatgcactgcttgatttgtgcctaaatatcattgtcttcctaaactgatt |
23851178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 23853536 - 23853464
Alignment:
| Q |
156 |
atgcaaatatctttatgaataaggaaaaaagatatatgatgcatattttgctgttattatttgaattataattacaatag |
235 |
Q |
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| T |
23853536 |
atgcaaatatctttatgaataa-gcaaagagatatctgatgcatatt------ttattatatgaattataattacaatag |
23853464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 204
Target Start/End: Complemental strand, 23851672 - 23851618
Alignment:
| Q |
149 |
agagttaatgcaaatatctttatgaataaggaaaaaagatatatgatgcatatttt |
204 |
Q |
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| T |
23851672 |
agagttaatgcaattatctttttgaataagg-aaagagatatctgatgcatatttt |
23851618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 466
Target Start/End: Complemental strand, 23851140 - 23851084
Alignment:
| Q |
410 |
tgatttcaaaccgagaagcaaatttggtaaattagaaataattacggatgtaatttt |
466 |
Q |
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| T |
23851140 |
tgatttcaaatcgagaagcaaaataagtaacttggaaacaattacggatgtaatttt |
23851084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 466
Target Start/End: Complemental strand, 23853272 - 23853216
Alignment:
| Q |
410 |
tgatttcaaaccgagaagcaaatttggtaaattagaaataattacggatgtaatttt |
466 |
Q |
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| T |
23853272 |
tgatttcaaaccgagaggcaaaataggtaacttggaaacaattacggatgtactttt |
23853216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 1744065 - 1744003
Alignment:
| Q |
127 |
gttatttatttaaaaaatatttagagttaatgcaaatatctttatgaataaggaaaaaagatat |
190 |
Q |
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| T |
1744065 |
gttatttatttagaaaattgtt-gagttaatgcaaatatcttcatgaataagtaaaagagatat |
1744003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 9020868 - 9020915
Alignment:
| Q |
128 |
ttatttatttaaaaaatatttagagttaatgcaaatatctttatgaata |
176 |
Q |
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| T |
9020868 |
ttatttatttaaaaaatattt-tagtcaatgcaaatatctttaagaata |
9020915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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