View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4800-Insertion-9 (Length: 417)
Name: NF4800-Insertion-9
Description: NF4800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4800-Insertion-9 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 8 - 417
Target Start/End: Complemental strand, 7032586 - 7032179
Alignment:
| Q |
8 |
ctttgaaggctcgtaagggaaatgcatccactcagatccagttccttgagctttttgagagacaaaacagatggatggacactagtcaaccctacacaaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
7032586 |
ctttgaaggctcgtaagggaaatgcatccactcagatccagttccttgagctttttgaga--caaaacagatggatggacactagtcaaccctacacaga |
7032489 |
T |
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| Q |
108 |
gtcggaggtttataacttcaagacttgcggcctttgaaaagtctggtagttctgttaggaatgtggatgacgagagtataaggacattcaaattcacgat |
207 |
Q |
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| T |
7032488 |
gtcggaggtttataacttcaagacttgcggcctttgaaaagtctggtagttctgttaggaatgtggatgacgagagtataaggacattcaaattcacaat |
7032389 |
T |
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| Q |
208 |
atcctgttacatttagaaccaaccaagacaagatttgtgagccaattgaatctgaattaacagaatgcttatgctggaatatatatattgtttaaacatg |
307 |
Q |
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| T |
7032388 |
atcctgttacatttagaaccaaccaagacaagatttgtgagccaattgaatctgaattaacagaatgcttatgctggaatatatatattgtttaaacatg |
7032289 |
T |
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| Q |
308 |
tctttggtacttaaaaatatcatttttgcttttaatccctaattttttcgagtcctatatcggtccttcatttctaaatgtgtgtcaagctttggtcttt |
407 |
Q |
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| T |
7032288 |
tctttggtacttaaaaatatcatttttgcttttaatccctaattttttcgagtcctatatcggtctttcatttctaaatgtgtgtcaagctttggtcttt |
7032189 |
T |
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| Q |
408 |
atttctagcg |
417 |
Q |
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| T |
7032188 |
atttctagcg |
7032179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 8 - 417
Target Start/End: Complemental strand, 7038283 - 7037880
Alignment:
| Q |
8 |
ctttgaaggctcgtaagggaaatgcatccactcagatccagttccttgagctttttgagagacaaaacagatggatggacactagtcaaccctacacaaa |
107 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||| || || ||||||||||| |||||||||||||| |||||||||||||||||||| | |
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| T |
7038283 |
ctttgaaggcttgtaagggaaatgcatccactcaaatccagtttctcaagatttttgagagagaaaacagatggatgaacactagtcaaccctacacaga |
7038184 |
T |
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| Q |
108 |
gtcggaggtttataacttcaagacttgcggcctttgaaaagtctggtagttctgttaggaatgtggatgacgagagtataaggacattcaaattcacgat |
207 |
Q |
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| T |
7038183 |
attggaggtccaagactgcgagacttgtggcctttgaaaagtctggtagctctgttaggagtgtggatgaatggagtataaggacattcaaattcacaag |
7038084 |
T |
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| Q |
208 |
atcctgttacatttagaaccaaccaagacaagatttgtgagccaattgaatct-gaattaacagaatgcttatgctggaatatatatattgtttaaacat |
306 |
Q |
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|||||||| ||||||||||||| |||||||||| |||| |||||||||||||| || ||||| | |||||||| |||| |||||||||||||||| || |
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| T |
7038083 |
atcctgtttcatttagaaccaatcaagacaagacttgtcagccaattgaatctggatttaactaagtgcttatgttgga--atatatattgtttaaatat |
7037986 |
T |
|
| Q |
307 |
gtctttggtacttaaaaatatcatttttgcttttaatccctaattttttcgagtcctatatcggtccttcatttctaaatgtgtgtcaagctttggtctt |
406 |
Q |
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||||| ||| ||| ||||||||||||||||||| |||||| |||| | ||| ||||| | |||||||||||||||| ||||| | ||||| |||| |
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| T |
7037985 |
gtcttaggtccttcaaaatatcatttttgctttgaatccc----ttttatgggtcttatattgatccttcatttctaaatacgtgtc-acctttgatctt |
7037891 |
T |
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| Q |
407 |
tatttctagcg |
417 |
Q |
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| T |
7037890 |
tatttgtagcg |
7037880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 8 - 335
Target Start/End: Complemental strand, 7025209 - 7024883
Alignment:
| Q |
8 |
ctttgaaggctcgtaagggaaatgcatccactcagatccagttccttgagctttttgagagacaaaacagatggatggacactagtcaaccctacacaaa |
107 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
7025209 |
ctttgaaggcttgtaagggaaatgcatccactcagatccagtttcttaagctttttcagagagaaaacagatggatggacactagtcaaccctacacaga |
7025110 |
T |
|
| Q |
108 |
gtcggaggtttataacttcaagacttgcggcctttgaaaagtctggtagttctgttaggaatgtggatgacgagagtataaggacattcaaattcacgat |
207 |
Q |
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| |||||| || ||| ||||||||| ||||||||||| |||||||| ||||||| | ||||||||| |||||||||| ||||||||||||| | |
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| T |
7025109 |
attggaggtccattactgcaagacttgtggcctttgaaagatctggtagctctgttaaaagtgtggatgaatggagtataaggtcattcaaattcacaag |
7025010 |
T |
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| Q |
208 |
atcctgttacatttagaaccaaccaagacaagatttgtgagccaattgaatctgaa-ttaacagaatgcttatgctggaatatatatattgtttaaacat |
306 |
Q |
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|||||||| ||||||||| | |||| |||| | ||||| |||||||||||| || |||| | ||||| ||||||||||||||||| ||||||| || |
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| T |
7025009 |
atcctgttccatttagaattagccaacacaaaacatgtgaaccaattgaatctaaatttaattgcatgctaatgctggaatatatata--gtttaaatat |
7024912 |
T |
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| Q |
307 |
gtctttggtacttaaaaatatcatttttg |
335 |
Q |
| |
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|| ||| || || |||||||||||||| |
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| T |
7024911 |
gtttttagtcgttcgaaatatcatttttg |
7024883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 7073745 - 7073985
Alignment:
| Q |
8 |
ctttgaaggctcgtaagggaaatgcatccactcagatccagttccttgagctttttgagagacaaaacagatggatggacactagtcaaccctacacaaa |
107 |
Q |
| |
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||||||||||| | |||||| |||||||||||||||||| || || || ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7073745 |
ctttgaaggcttttcagggaactgcatccactcagatccaatttctcaagatttttgagagagaaaacagatggatggacactagtcaaccctacacaag |
7073844 |
T |
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| Q |
108 |
gtcggaggtttataacttcaagacttgcggcctttgaaaagtctggtagttctgttaggaatgtggatgacgagagtataaggacattcaaattcacgat |
207 |
Q |
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| |||||| | ||| ||||| ||| ||||||||||||||||||||| || ||||| | || |||||| |||||||||||||||||||||||||| || |
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| T |
7073845 |
attggaggtccaatactgcaagatttgtggcctttgaaaagtctggtagctccgttagaagtgcggatgaagagagtataaggacattcaaattcacaat |
7073944 |
T |
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| Q |
208 |
atcctgttacatttagaaccaaccaagacaagatttgtgag |
248 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
7073945 |
atcctgttacatttataaccaaccaagacaagaattgtgag |
7073985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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