View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4800_high_2 (Length: 406)
Name: NF4800_high_2
Description: NF4800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4800_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 7 - 327
Target Start/End: Original strand, 48036960 - 48037280
Alignment:
| Q |
7 |
aattatgcatcgataaaacttaaacgaatcgatctaatccaaaaacacacttaaaccgcattggatcgaaactgcgcttgctatttaaatctttggatca |
106 |
Q |
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| T |
48036960 |
aattatgcatcgataaaacttaaacgaatcgatctaatccaaaaacacacttaaaccgcattggatcgaaactgcgcttgctatttaaatctttggatca |
48037059 |
T |
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| Q |
107 |
aaatacatttttgcctcagctagtctaaattgaaccgtaaaacacacacatacttctacgcaccgcagaatatctatttttaagacgtatgtataaacag |
206 |
Q |
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| T |
48037060 |
aaatacatttttgcctcagctagtctaaatcgaaccgcaaaacacacacatacttctacgcaccccaaaatatctatttttaagacgtatgtataaacag |
48037159 |
T |
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| Q |
207 |
ttttttattcaagtccattgtacatgtatctcacagcataatttacaatccttagatgcaaagcagcatatcggatcaaaggatcaaatcacaagttatc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48037160 |
ttttttattcaagtccattgtacatgtatctcacagcataatttacaatccttagatgcaaagcagcatatcggatcaaaggatcaaatcacaagttatc |
48037259 |
T |
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| Q |
307 |
agtttcgatgtcaagaaagtg |
327 |
Q |
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| T |
48037260 |
agtttcgatgtcaagaaagtg |
48037280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 358 - 403
Target Start/End: Original strand, 48037311 - 48037356
Alignment:
| Q |
358 |
ttagcatcagatcaacaccatccctaccatgacattcatctcagtc |
403 |
Q |
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| T |
48037311 |
ttagcatcagatcaacaccatccctaccatgacattgatatcagtc |
48037356 |
T |
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