View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4800_high_4 (Length: 314)
Name: NF4800_high_4
Description: NF4800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4800_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 292
Target Start/End: Complemental strand, 32440306 - 32440016
Alignment:
| Q |
4 |
gagagggagcaaacttcatttatttccacatttaacaacaacatcaatgtcaacgaaggctctgtcatacaaaatgtggtagactcttacaacataacaa |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||| |||||||||||||||| |||| |
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| T |
32440306 |
gagagggagcaaacttcatttatttccacatttaacaacaacatcaatgtcaatgaaggctttgtcacacaaaatgtgctagactcttacaacatgacaa |
32440207 |
T |
|
| Q |
104 |
actaaaattacaatatcnnnnnnngaaaataattgtacacaaagtcnnnnnnnattagtgtccttccatagtttaaacattcgttatgtatatttcaggt |
203 |
Q |
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||||||||||||||||| ||||| | |||||||||||||| | ||||||| ||||||||||||||||||| |||||||||||||| || |
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| T |
32440206 |
actaaaattacaatatcaaaaaaagaaaaaagttgtacacaaagtctttctttactagtgtcattccatagtttaaacattccttatgtatatttcacgt |
32440107 |
T |
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| Q |
204 |
aaatattcagacaagttgg--gtgtaattaatatctataataacaactaatattaaattgtcttttatgtataaataaaaagagtttaatg |
292 |
Q |
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| T |
32440106 |
acatattcacataagttggcggtgtaattaatatctataataacaactaatattaaattgtcttttatgtataaataaaaagagtttaatg |
32440016 |
T |
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