View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4800_high_9 (Length: 243)
Name: NF4800_high_9
Description: NF4800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4800_high_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 20 - 243
Target Start/End: Complemental strand, 14469856 - 14469633
Alignment:
| Q |
20 |
cgtagcgcttaacacttatcagcatctggagttcctttggtacatgataatcatttattttgctcgtaaaaacattctttaccgcctggtcaaatattta |
119 |
Q |
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| T |
14469856 |
cgtagcgcttaacactaagcagcatctggagttccgttggtacatgataatcatttatttttctcgtaaaaaaattctttacc--caggtcaaccattta |
14469759 |
T |
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| Q |
120 |
ctgctcat--tatccaaggattcttggattgttgattttggtcctagttcacaacttcacatatggcattcctcaattatttcttgtatctcaagatgtt |
217 |
Q |
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| T |
14469758 |
ctgttcataatatccatggattcttggattgttgattttggttctagttcacaacttcacatatgacattcctcaactatttctagtatctcaagatgtt |
14469659 |
T |
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| Q |
218 |
tctaatagatttcaagcatcattctt |
243 |
Q |
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| T |
14469658 |
tctaatagatttcaggcatcattctt |
14469633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 14484936 - 14484896
Alignment:
| Q |
189 |
ctcaattatttcttgtatctcaagatgtttctaatagattt |
229 |
Q |
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| T |
14484936 |
ctcaattatttctactatctcaaaatgtttctaatagattt |
14484896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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