View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4800_low_1 (Length: 446)
Name: NF4800_low_1
Description: NF4800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4800_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 436
Target Start/End: Original strand, 32897622 - 32898050
Alignment:
| Q |
20 |
ctacattgaaggaacattcataaatcattgtagtataacgaggcacgctattattttcaatattagatacttggtttgccatttcacatgcatgtaactt |
119 |
Q |
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| T |
32897622 |
ctacattgaaggaacattcataaatcattgtagtataacgaggcacactgttattttcaatattagatacttggtttgccatttcacatgcatgtaactt |
32897721 |
T |
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| Q |
120 |
tccaattagagagaattagcnnnnnnnnn------ggaagtttaaatatattacaattcacatttacaagcagacaacattggtgataagaggtcacatt |
213 |
Q |
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| T |
32897722 |
ttcaattagagagaattagcaacaaaaaaaaaagaggaagtttaaatatattacaattcacatttacaagcaaacaacattggtgataagaggtcacatt |
32897821 |
T |
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| Q |
214 |
gacccgttaaaacttaaactttatttgatacagt-ataaatttagatcat------atgacacagtgtttagatacatctttatgagatagaattacaca |
306 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32897822 |
gacccgttaaaacttaaactttatttgatacagtgaaaaatttagatcatcacaaaatgacagagtgtttagatacatctttatgagatagaattacaca |
32897921 |
T |
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| Q |
307 |
cattcaagctctttatgtagtctaccaaaaagggtttcaaaaaccaagtagatatcataattggtcaccactatagnnnnnnncctgtcttttaccttaa |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| |
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| T |
32897922 |
cattcaagctctttatgtagtctaccaaaaagggtttcaaaaaccaagtagatatcataattggtcaccaccatag-ttttttcctatcttttaccttaa |
32898020 |
T |
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| Q |
407 |
tttataaataaatctctctttgtacctttg |
436 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
32898021 |
tttataaataaatctctctttgtacctttg |
32898050 |
T |
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