View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4800_low_3 (Length: 378)
Name: NF4800_low_3
Description: NF4800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4800_low_3 |
 | |
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| [»] scaffold0933 (1 HSPs) |
| | |
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| [»] scaffold1939 (1 HSPs) |
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| [»] scaffold0570 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 14507024 - 14507235
Alignment:
| Q |
12 |
atgaatgaaactcttaattctcattagatgaaaagagtgcagtacaatgatatttatacaagagagggaaagtatgctaagtactgtgaactagcaacta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14507024 |
atgaatgaaactcttaattctcattagatgaaaagagtacagtacaatgatatttatacaagagagggaaagtatgctaaatactgtgaactagcaacta |
14507123 |
T |
|
| Q |
112 |
gagaattgctcctctactggataacttgctccacaagttatctctaatagtaaagctaaaacataaaatgtaataaataccactacttgtcttttctttc |
211 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14507124 |
gagaattgctactctactggataacttgctccacaagttatctctaatagtaaagctaaaacataaaatgtaataaataccactacttgtcttttctttc |
14507223 |
T |
|
| Q |
212 |
tgtatgggtcaa |
223 |
Q |
| |
|
|||||||||||| |
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|
| T |
14507224 |
tgtatgggtcaa |
14507235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 14484575 - 14484625
Alignment:
| Q |
291 |
ttgtatatgagtgtccatacggtccccaatttatatcacaatgctatcaaa |
341 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14484575 |
ttgtatgtgagtgtccatacggtccccaatttatatcacaatgctatcaaa |
14484625 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 337 - 373
Target Start/End: Original strand, 14469568 - 14469604
Alignment:
| Q |
337 |
tcaaatatgacactgaagaagaagagaaataatgtga |
373 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||| |
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|
| T |
14469568 |
tcaaatatgacactcaagaagaagcgaaataatgtga |
14469604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 14484470 - 14484506
Alignment:
| Q |
187 |
aataccactacttgtcttttctttctgtatgggtcaa |
223 |
Q |
| |
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|||||||||||||||||||||||| ||||| |||||| |
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|
| T |
14484470 |
aataccactacttgtcttttctttttgtattggtcaa |
14484506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 28522103 - 28522277
Alignment:
| Q |
12 |
atgaatgaaactcttaattctcattagatgaaaagagtgcagtacaatgatatttatacaagagagggaaagtatgctaagtactgtgaactagcaacta |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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|
| T |
28522103 |
atgaatgaaactcttaattctcattagatgaaaagagtgcagtacaatgatatttatacaaatgagggaaagtatgctaagtactgtgaactagaaacta |
28522202 |
T |
|
| Q |
112 |
gagaattgctcctctactggataacttgctccacaagttatctctaatagtaaagctaaaacataaaatgtaata |
186 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28522203 |
gagaattgctactctactggataacttgctccacaagttatctctaatagtaaagctaaaacataaaatgtaata |
28522277 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 37 - 186
Target Start/End: Complemental strand, 28294795 - 28294646
Alignment:
| Q |
37 |
agatgaaaagagtgcagtacaatgatatttatacaagagagggaaagtatgctaagtactgtgaactagcaactagagaattgctcctctactggataac |
136 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
28294795 |
agatgaaaagagtgtagtacaatgatatttatacaatagagggaaagtatgctaagtactgtgaactagcaactagagaattgctactctactagataac |
28294696 |
T |
|
| Q |
137 |
ttgctccacaagttatctctaatagtaaagctaaaacataaaatgtaata |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28294695 |
ttgctccacaagttatctctaatagtaaagctaaaacataaaatgtaata |
28294646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 28517278 - 28517427
Alignment:
| Q |
37 |
agatgaaaagagtgcagtacaatgatatttatacaagagagggaaagtatgctaagtactgtgaactagcaactagagaattgctcctctactggataac |
136 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
28517278 |
agatgaaaagagtgtagtacaatgatatttatacaatagagggaaagtatgctaagtactgtgaactagcaactagagaattgctactctactagataac |
28517377 |
T |
|
| Q |
137 |
ttgctccacaagttatctctaatagtaaagctaaaacataaaatgtaata |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28517378 |
ttgctccacaagttatctctaatagtaaagctaaaacataaaatgtaata |
28517427 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 19409789 - 19409963
Alignment:
| Q |
12 |
atgaatgaaactcttaattctcattagatgaaaagagtgcagtacaatgatatttatacaagagagggaaagtatgctaagtactgtgaactagcaacta |
111 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
19409789 |
atgaatgaaactcttaattctcataggatgaaaagagtgcagtacaatgatatttatacaagtgagggaaagtatgctaagtaccgtgaactagaaacta |
19409888 |
T |
|
| Q |
112 |
gagaattgctcctctactggataacttgctccacaagttatctctaatagtaaagctaaaacataaaatgtaata |
186 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
19409889 |
gagaattgctactctactggataacttgctccacaagttatctcttataataaagctaaaacataaaatgtaata |
19409963 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 42133679 - 42133564
Alignment:
| Q |
12 |
atgaatgaaactcttaattctcattagatgaaaagagtgcagtacaatgatatttatacaagagagggaaagtatgctaagtactgtgaactagcaacta |
111 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42133679 |
atgaatgaaactcttaattctcattatctcaaaagagtacagtacaatggtatttatacaaaagagggaaagtatgctaagtactgtgaactagcagcta |
42133580 |
T |
|
| Q |
112 |
gagaattgctcctcta |
127 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
42133579 |
gagaattgctactcta |
42133564 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 21032057 - 21032172
Alignment:
| Q |
12 |
atgaatgaaactcttaattctcattagatgaaaagagtgcagtacaatgatatttatacaagagagggaaagtatgctaagtactgtgaactagcaacta |
111 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21032057 |
atgaatgaaactcttaattctcattatctgaaaagagtacagtacaatggtatttatacaaaagagggaaagtatgctaagtactgtgaactagcaacta |
21032156 |
T |
|
| Q |
112 |
gagaattgctcctcta |
127 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
21032157 |
gagaattgctactcta |
21032172 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 12 - 127
Target Start/End: Complemental strand, 19873956 - 19873841
Alignment:
| Q |
12 |
atgaatgaaactcttaattctcattagatgaaaagagtgcagtacaatgatatttatacaagagagggaaagtatgctaagtactgtgaactagcaacta |
111 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19873956 |
atgaatgaaactcttaattctcattatctaaaaagagtacagtacaatggtatttatacaaaagagggaaagtatgctaagtactgtgaactagcaacta |
19873857 |
T |
|
| Q |
112 |
gagaattgctcctcta |
127 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
19873856 |
gagaattgctactcta |
19873841 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 18484089 - 18484204
Alignment:
| Q |
12 |
atgaatgaaactcttaattctcattagatgaaaagagtgcagtacaatgatatttatacaagagagggaaagtatgctaagtactgtgaactagcaacta |
111 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18484089 |
atgaatgaaactcttaattctcattatgtcaaaagagtacagtacaatggtatttatacaaaagagggaaagtatgctaagtactgtgaactagcaacta |
18484188 |
T |
|
| Q |
112 |
gagaattgctcctcta |
127 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
18484189 |
gagaattgctactcta |
18484204 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 18479255 - 18479370
Alignment:
| Q |
12 |
atgaatgaaactcttaattctcattagatgaaaagagtgcagtacaatgatatttatacaagagagggaaagtatgctaagtactgtgaactagcaacta |
111 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| |||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18479255 |
atgaatgaaactcttaattctcattatgtcaaaagagtacagtacaatggtatttatacaaaagaggaaaagtatgctaagtactgtgaactagcaacta |
18479354 |
T |
|
| Q |
112 |
gagaattgctcctcta |
127 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
18479355 |
gagaattgctactcta |
18479370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0933 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0933
Description:
Target: scaffold0933; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 4009 - 3897
Alignment:
| Q |
12 |
atgaatgaaactcttaattctcattag---atgaaaagagtgcagtacaatgatatttatacaagagagggaaagtatgctaagtactgtgaactagcaa |
108 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||| || |||||||||||||||||| |||||||||||||||| |
|
|
| T |
4009 |
atgaatgaaactcttaattctcattttgttatgaaaagagtacagtacaatggtatttatataaaagagggaaagtatgctaattactgtgaactagcaa |
3910 |
T |
|
| Q |
109 |
ctagagaattgct |
121 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3909 |
ctagagaattgct |
3897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1939 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold1939
Description:
Target: scaffold1939; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 1223 - 1150
Alignment:
| Q |
54 |
tacaatgatatttatacaagagagggaaagtatgctaagtactgtgaactagcaactagagaattgctcctcta |
127 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
1223 |
tacaatggtatttatacaaaagagggaaagtatgctaagtactgtgaactagcagctagagaattgctactcta |
1150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 2991 - 2959
Alignment:
| Q |
12 |
atgaatgaaactcttaattctcattagatgaaa |
44 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
2991 |
atgaatgaatctcttaattctcattagatgaaa |
2959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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