View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4800_low_5 (Length: 285)
Name: NF4800_low_5
Description: NF4800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4800_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 10 - 267
Target Start/End: Complemental strand, 39230402 - 39230146
Alignment:
| Q |
10 |
caatgagaggagtcgtcaaaaaagagagtatgatagtacgatttttcgttgaaaattatacaaaatggtttggtgatcagcatatctcaaattctaatta |
109 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39230402 |
caataagaggagtcgtcaaaaaaaagagtatgatagtacgatttttcgttgaaaattatacaaaatggtttggtgatcagcatatctcaaattctaatta |
39230303 |
T |
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| Q |
110 |
gtcatttaaaattgggattagggtctaattattagcctaaaagacaagagtgatgcaatcaaaaattattttcatgtgtcaaacaaaattgacatgataa |
209 |
Q |
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| T |
39230302 |
gtcatttaaaattgggattagggtctaattattagcctaaaa-acaagagtgatgcaatcaaaaattattttcatgtgtcatacaaaattgacatgataa |
39230204 |
T |
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| Q |
210 |
gaatcttattaatgtgatatactgtaaaactttggaacatggttatcaaatcagagtt |
267 |
Q |
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| T |
39230203 |
gaatcttattaatgtgatatactgtaaaactttggaacatggttatcaaatcagagtt |
39230146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 267
Target Start/End: Complemental strand, 25549734 - 25549481
Alignment:
| Q |
14 |
gagaggagtcgtcaaaaaagagagtatgatagtacgatttttcgttgaaaattatacaaaatggtttggtgatcagcatatctcaaattctaattagtca |
113 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25549734 |
gagaggagtcgtcaaaaaagagagtatgatagtatgatttttcgttgaaaattatacaaaatggtttggtgatcagcatatctcaaattctaattagtcg |
25549635 |
T |
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| Q |
114 |
tttaaaattgggattagggtctaattattagcctaaaagacaagagtgatgcaatcaaaaattattttcatgtgtcaaacaaaattgacatgataagaat |
213 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
25549634 |
tttaaaattgggattaggatctaattattagcctaaaagacaagagtgatgcaatgaaaaattatttttatgtgtcatacaaaattgacatgataagaat |
25549535 |
T |
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| Q |
214 |
cttattaatgtgatatactgtaaaactttggaacatggttatcaaatcagagtt |
267 |
Q |
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| T |
25549534 |
cttattaatgtgatatactgtaaaactttggaacatggttatcaaatcagagtt |
25549481 |
T |
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