View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4800_low_6 (Length: 283)
Name: NF4800_low_6
Description: NF4800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4800_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 37898886 - 37898640
Alignment:
| Q |
17 |
agatacaaagacatcattttatactatgagttgggggatgtgtctagagctgccctgagctatattttttaggaagcaaaacgttccaagaaatggtaga |
116 |
Q |
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| T |
37898886 |
agatacaaagacatcattttatactatgagttgggggatgtgtctagagctgccc--agctatattttttaggaagcaaaacgttccaagaaatggtaga |
37898789 |
T |
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| Q |
117 |
gaattcacaattatcttatgtgtcaaccaaccaccaatcaccatttgcatgcttcaatcatcctttgaacactttgtaactataaattgtagaaatcaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37898788 |
gaattcacaattatcttatgtgtcaaccaaccaccaatcaccatttgcatgcttcaatcaccctttgaacactttgtaactataaattgtagaaatcaca |
37898689 |
T |
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| Q |
217 |
aatatattatcatgtgaatctctctgccccgtcacccttcacatccttc |
265 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37898688 |
aatatattatcatgcgaatctctctgccccgtcacccttcacatccttc |
37898640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 105 - 265
Target Start/End: Original strand, 37898318 - 37898478
Alignment:
| Q |
105 |
agaaatggtagagaattcacaattatcttatgtgtcaaccaaccaccaatcaccatttgcatgcttcaatcatcctttgaacactttgtaactataaatt |
204 |
Q |
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| T |
37898318 |
agaaattgcagagaattcacgattatcttatgtgccaaccaacaatcaatcaccctttgcatgcttcaatcaccctttgaacactttataactataaatt |
37898417 |
T |
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| Q |
205 |
gtagaaatcacaaatatattatcatgtgaatctctctgccccgtcacccttcacatccttc |
265 |
Q |
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| T |
37898418 |
ttagaaatcacaaatatattatcatacaaatctctctgtcccgtcaccctttacatccttc |
37898478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 3763066 - 3763121
Alignment:
| Q |
49 |
gggggatgtgtctagagctgccctgagctatattttttaggaagcaaaacgttcca |
104 |
Q |
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||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
3763066 |
gggggatgtatctagagttgccccgagctatattttttaggaagcaaaacgttcca |
3763121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 23196240 - 23196147
Alignment:
| Q |
19 |
atacaaagacatcattttatactatgagttggggg---atgtgtctagagctgccctgagctatattttttaggaagcaaaacgttccaagaaa |
109 |
Q |
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||||||||||| ||| || ||||||||||||| || |||| |||||||||| | |||||| ||||||| ||||||||||| | ||||||||| |
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| T |
23196240 |
atacaaagacaacatattgtactatgagttggagggttatgtttctagagctggcttgagctttatttttgaggaagcaaaatgctccaagaaa |
23196147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 34110609 - 34110554
Alignment:
| Q |
54 |
atgtgtctagagctgccctgagctatattttttaggaagcaaaacgttccaagaaa |
109 |
Q |
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|||||||||||| | ||||||||||||||||||||| |||||| ||||||||||| |
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| T |
34110609 |
atgtgtctagagttatcctgagctatattttttaggaggcaaaatgttccaagaaa |
34110554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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