View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4800_low_7 (Length: 270)
Name: NF4800_low_7
Description: NF4800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4800_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 265
Target Start/End: Original strand, 4303365 - 4303623
Alignment:
| Q |
7 |
agataaggctaaaacagatttacaacttacgaatccaaaattactaacagaaagatagaatagcagtaactatgttgtgagaactccaataaaaagcagt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4303365 |
agataaggctaaaacagatttacaacttacgaatccaaaattactaacagaaagatagaatagcagcaactatgttgtgagaactccaataaaaagcagt |
4303464 |
T |
|
| Q |
107 |
gataataacaaaatccagctgcaaaacggtggacttcatttgaagtgggcatcggaacctgttgacaaactatttggagtggtctgtccagctctataca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4303465 |
gataataacaaaatccagctgcaaaacggtggacttcatttgaagtgggcatcggaacctgttgacaaactatttggagtggtctgtccagctctataca |
4303564 |
T |
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| Q |
207 |
ttcaaattaggtgcttagcttaagtaatcaatcactggccatgaaaactaattcctatg |
265 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4303565 |
ttcaaatttggtgcttagcttaggtaatcaatcactggccatgaaaactaattcctatg |
4303623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 27536831 - 27537048
Alignment:
| Q |
7 |
agataaggctaaaacagatttacaacttacgaatccaaaattactaacagaaagatagaatagcagtaactatgttgtgagaactccaataaaaagcagt |
106 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| || |
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| T |
27536831 |
agataaggctaaaacatatttacaacttacgaatccaaaattattaacataaagatagaatagcagtaactatattgtgagaactacaataaaaagccgt |
27536930 |
T |
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| Q |
107 |
gataataacaaaatccagctgcaaaacggtggacttcatttgaagtgggcatcggaacctgttgacaaactatttggagtggtctgtccagctctataca |
206 |
Q |
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| T |
27536931 |
gataatagcaaaatccatctgcaaaactatggacttaatttgaagtggggacaggaacctgatgacaaactgttttgagtagtctgtccagctctataca |
27537030 |
T |
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| Q |
207 |
ttcaaattaggtgcttag |
224 |
Q |
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|||||||| | ||||||| |
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| T |
27537031 |
ttcaaatttgctgcttag |
27537048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 155
Target Start/End: Original strand, 15643359 - 15643506
Alignment:
| Q |
7 |
agataaggctaaaacagatttacaacttacgaatccaaaattactaacagaaagatagaatagcagtaactatgttgtgagaactccaataaaaagcagt |
106 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| | ||| ||| ||||||| ||||||||||| ||||||||||| |||||||||||||| |
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| T |
15643359 |
agataaggctaaaacatatttacaacttacgaatccaaaattattgacataaa-atagaatcgcagtaactatattgtgagaactacaataaaaagcagt |
15643457 |
T |
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| Q |
107 |
gataataacaaaatccagctgcaaaacggtggacttcatttgaagtggg |
155 |
Q |
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||||||| ||||||||| ||||||||| ||||||| |||||||||||| |
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| T |
15643458 |
gataatagcaaaatccatctgcaaaactatggacttaatttgaagtggg |
15643506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 15654666 - 15654811
Alignment:
| Q |
7 |
agataaggctaaaacagatttacaacttacgaatccaaaattactaacagaaagatagaatagcagtaactatgttgtgagaactccaataaaaagcagt |
106 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||| ||||| ||| ||||||||||||||||||| ||||||||||| ||||||||| |||| |
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| T |
15654666 |
agataaggctaaaacatatttacaacttaagaatccaaaattattaacataaa-atagaatagcagtaactatattgtgagaactacaataaaaaacagt |
15654764 |
T |
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| Q |
107 |
gataataacaaaatccagctgcaaaacggtggacttcatttgaagtg |
153 |
Q |
| |
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||||||| ||||||||| || |||||| ||||||| |||||||||| |
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| T |
15654765 |
gataatagcaaaatccatctacaaaactatggacttaatttgaagtg |
15654811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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