View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4801-Insertion-5 (Length: 498)

Name: NF4801-Insertion-5
Description: NF4801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4801-Insertion-5
NF4801-Insertion-5
[»] chr2 (9 HSPs)
chr2 (8-158)||(3220613-3220763)
chr2 (95-157)||(12505163-12505225)
chr2 (95-157)||(14680701-14680763)
chr2 (95-157)||(39587777-39587839)
chr2 (158-210)||(3228271-3228323)
chr2 (48-101)||(12505091-12505144)
chr2 (48-101)||(14680782-14680835)
chr2 (48-101)||(39587705-39587758)
chr2 (159-210)||(3338651-3338702)
[»] scaffold0014 (4 HSPs)
scaffold0014 (95-157)||(144162-144224)
scaffold0014 (95-157)||(173956-174018)
scaffold0014 (48-101)||(173884-173937)
scaffold0014 (48-101)||(144090-144143)
[»] chr8 (5 HSPs)
chr8 (95-157)||(23928749-23928811)
chr8 (95-157)||(44198340-44198402)
chr8 (48-101)||(23928830-23928883)
chr8 (48-101)||(44198268-44198321)
chr8 (48-95)||(20793810-20793857)
[»] chr7 (8 HSPs)
chr7 (95-157)||(42105588-42105650)
chr7 (95-157)||(48513216-48513278)
chr7 (95-157)||(3718010-3718072)
chr7 (95-157)||(48727658-48727720)
chr7 (48-101)||(42105516-42105569)
chr7 (48-101)||(48513297-48513350)
chr7 (48-101)||(48727739-48727792)
chr7 (48-101)||(3718091-3718144)
[»] chr5 (7 HSPs)
chr5 (95-157)||(36662969-36663031)
chr5 (96-157)||(36678747-36678808)
chr5 (97-157)||(23198492-23198552)
chr5 (48-101)||(36662897-36662950)
chr5 (48-101)||(36678828-36678881)
chr5 (48-101)||(43560524-43560577)
chr5 (48-101)||(23198573-23198626)
[»] chr3 (6 HSPs)
chr3 (95-157)||(46073793-46073855)
chr3 (96-157)||(38327475-38327536)
chr3 (95-157)||(55489087-55489149)
chr3 (48-101)||(38327556-38327609)
chr3 (48-101)||(46073721-46073774)
chr3 (48-101)||(55489015-55489068)
[»] chr6 (2 HSPs)
chr6 (96-157)||(29652218-29652279)
chr6 (48-101)||(29652145-29652198)
[»] chr1 (6 HSPs)
chr1 (96-157)||(52608794-52608855)
chr1 (95-157)||(52888149-52888210)
chr1 (48-101)||(52608875-52608928)
chr1 (48-101)||(52888077-52888130)
chr1 (95-135)||(29887395-29887435)
chr1 (57-101)||(29887332-29887376)
[»] scaffold1284 (1 HSPs)
scaffold1284 (48-101)||(468-521)


Alignment Details
Target: chr2 (Bit Score: 151; Significance: 1e-79; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 8 - 158
Target Start/End: Original strand, 3220613 - 3220763
Alignment:
Q  8 tcttgctcttcccatagttagtgcttcacacgaacgcgtcttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctctcacagg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220613 tcttgctcttcccatagttagtgcttcacacgaacgcgtcttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctctcacagg 3220712  T
Q  108 gacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctatg 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3220713 gacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctatg 3220763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 12505163 - 12505225
Alignment:
Q  95 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12505163 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 12505225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 14680763 - 14680701
Alignment:
Q  95 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14680763 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 14680701  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 39587777 - 39587839
Alignment:
Q  95 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  39587777 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaggagtttgaccctat 39587839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 3228271 - 3228323
Alignment:
Q  158 gattactttcttaaatgcatgcatttggctaatttttgtcgttgattcatgat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3228271 gattactttcttaaatgcatgcatttggctaatttttgtcgttgattcatgat 3228323  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 12505091 - 12505144
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  12505091 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 12505144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 14680835 - 14680782
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  14680835 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 14680782  T

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Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 39587705 - 39587758
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  39587705 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 39587758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 3338651 - 3338702
Alignment:
Q  159 attactttcttaaatgcatgcatttggctaatttttgtcgttgattcatgat 210  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  3338651 attactttcttaaatgcatgcatttggctattttttttcgttgattcatgat 3338702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 144162 - 144224
Alignment:
Q  95 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  144162 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 144224  T

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Target: scaffold0014; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 173956 - 174018
Alignment:
Q  95 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  173956 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 174018  T

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Target: scaffold0014; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 173884 - 173937
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  173884 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 173937  T

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Target: scaffold0014; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 144090 - 144143
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||    
T  144090 ttcacgcactgtcgttgaattcattgctcgaattcgcgcaatttcagagtctct 144143  T

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Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 23928811 - 23928749
Alignment:
Q  95 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23928811 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 23928749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 44198340 - 44198402
Alignment:
Q  95 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44198340 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 44198402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 23928883 - 23928830
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||||| |||||||||| ||||||||||||||||| ||||||||||||||||    
T  23928883 ttcacgcactgtcgctgaattcattgctcgaattcgcacaatttcagagtctct 23928830  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 44198268 - 44198321
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||| |||||    
T  44198268 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagaatctct 44198321  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 20793810 - 20793857
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcaga 95  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  20793810 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcaga 20793857  T

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Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 42105588 - 42105650
Alignment:
Q  95 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42105588 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 42105650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 48513278 - 48513216
Alignment:
Q  95 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48513278 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 48513216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 3718072 - 3718010
Alignment:
Q  95 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3718072 agtctctcacagggacctaattgaagttgttcttgaagcacttccagaagagtttgaccctat 3718010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 48727720 - 48727658
Alignment:
Q  95 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 157  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48727720 agtctctcacagggtcctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 48727658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 42105516 - 42105569
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  42105516 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 42105569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 48513350 - 48513297
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  48513350 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 48513297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 48727792 - 48727739
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||    
T  48727792 ttcacgcactgtcgttgaattcattgctcgaattcgcgcaatttcagagtctct 48727739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 3718144 - 3718091
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||    
T  3718144 ttcacgcactgtcgttgaattcattgctcgaattcacgcaatttcagagtctct 3718091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 36662969 - 36663031
Alignment:
Q  95 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36662969 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 36663031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 36678808 - 36678747
Alignment:
Q  96 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36678808 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 36678747  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 97 - 157
Target Start/End: Complemental strand, 23198552 - 23198492
Alignment:
Q  97 tctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 157  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23198552 tctctcatagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 23198492  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 36662897 - 36662950
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||| |||||    
T  36662897 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagaatctct 36662950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 36678881 - 36678828
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||||| |||| ||||| ||||||||||||||||||||||||||||||||||    
T  36678881 ttcacgcactgtctctgaattcattgctcgaattcgcgcaatttcagagtctct 36678828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 43560524 - 43560577
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  43560524 ttcacgcactgtcgctgaattcattgctcgaattctcgcaatttcagagtctct 43560577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 23198626 - 23198573
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||||| |||||||||| |||||||||||||| || ||||||||||||||||    
T  23198626 ttcacgcactgtcgctgaattcattgctcgaatttgcacaatttcagagtctct 23198573  T

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Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 46073793 - 46073855
Alignment:
Q  95 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46073793 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 46073855  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 38327536 - 38327475
Alignment:
Q  96 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38327536 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 38327475  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 55489087 - 55489149
Alignment:
Q  95 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 157  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  55489087 agtctctcacagggacctaattgaagttgttcttgaagcacttcttgaagagtttgaccctat 55489149  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 38327609 - 38327556
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  38327609 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 38327556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 46073721 - 46073774
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||    
T  46073721 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaaattcagagtctct 46073774  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 55489015 - 55489068
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||||| |||||||||| ||||||||||||||||||||||||| ||||||||    
T  55489015 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttctgagtctct 55489068  T

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Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 29652218 - 29652279
Alignment:
Q  96 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29652218 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 29652279  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 29652145 - 29652198
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  29652145 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 29652198  T

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Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 52608855 - 52608794
Alignment:
Q  96 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52608855 gtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 52608794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 52888149 - 52888210
Alignment:
Q  95 agtctctcacagggacctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 157  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  52888149 agtctctcacagg-acctaattgaagttgttcttgaagcacttcctgaagagtttgaccctat 52888210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 52608928 - 52608875
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  52608928 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 52608875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 52888077 - 52888130
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  52888077 ttcacgcactgtcgctgaattcattgctcgaattcgcgcaatttcagagtctct 52888130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 29887395 - 29887435
Alignment:
Q  95 agtctctcacagggacctaattgaagttgttcttgaagcac 135  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29887395 agtctctcacagggacctaattgaagttgttcttgaagcac 29887435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 29887332 - 29887376
Alignment:
Q  57 tgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||    
T  29887332 tgtcgccgaattcattgctcgaattcgcgcaatttcagagtctct 29887376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1284 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1284
Description:

Target: scaffold1284; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 468 - 521
Alignment:
Q  48 ttcacgcattgtcgctgaaatcattgctcgaattcgcgcaatttcagagtctct 101  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||||||||||||    
T  468 ttcacgcactgtcgctgaattcattgctcgaattctcgcaatttcagagtctct 521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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