View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4801_high_1 (Length: 608)
Name: NF4801_high_1
Description: NF4801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4801_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 32 - 414
Target Start/End: Original strand, 43868405 - 43868789
Alignment:
| Q |
32 |
acaagaaagaagtctcccagtctcagttacacatgtttgatttatttaattaatagattaataaaatattggtctttgggagtaaatggtctgtgtaact |
131 |
Q |
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| T |
43868405 |
acaagaaagaagtctcccagtctcagttacacatgtttgatttatttaattaatagattaataaaatattggtctttgggagtaaatggtctgtgtaact |
43868504 |
T |
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| Q |
132 |
acatgagggaacatttttgaaaaacgttattaaggtggttttaagtaata--aaccactgctattaaatttttattgtgttattaaaattaaccgataaa |
229 |
Q |
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| T |
43868505 |
acatgagggaacagttctgaaaaacgttattaaggtggttttaagtaatattaaccactgctattaaatttttattgtgttattaaaattaaccgataaa |
43868604 |
T |
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| Q |
230 |
caaccataacaatgcagcaaatattgatggtgaagagcaaaactaaatataaagtttaaggtaaggcctacattatcttctcatgatttggagtaaattt |
329 |
Q |
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| T |
43868605 |
caaccataacaatgcagcaaatattgatggtgaagagcaaaactaaatataaagtttaaggtaaggcctacattatcttctcatgatttggagtaaattt |
43868704 |
T |
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| Q |
330 |
gtctccgatgacttgaaccaattaaactgtagaatatgaagtcaatcctcggagtcgaacaaatgagtcaattttagttctaagg |
414 |
Q |
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| T |
43868705 |
gtctccgatgacatgaaccacttaaagtgtagaatatgaagtcaatcctcggagtcgaacaaatgagtgaattttagttctaagg |
43868789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 477 - 551
Target Start/End: Original strand, 43868852 - 43868926
Alignment:
| Q |
477 |
cattgtatgatttatatcattcaaaatttaacatcaaagtttatttatctttatccttagatcaactatcattct |
551 |
Q |
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| T |
43868852 |
cattgtatggtttatatcattcaaaatttaacatcaaagtttatttatctttatccttagatcaactatcattct |
43868926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 526 - 592
Target Start/End: Original strand, 43868928 - 43868994
Alignment:
| Q |
526 |
tttatccttagatcaactatcattctccttcattcaagaacatgacctccaaacacacccctttcat |
592 |
Q |
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| T |
43868928 |
tttatccttagatcaactatcattctccttcattcaagaacatgacctccaaacacacccctttcat |
43868994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 488 - 565
Target Start/End: Complemental strand, 43869898 - 43869821
Alignment:
| Q |
488 |
ttatatcattcaaaatttaacatcaaagtttatttatctttatccttagatcaactatcattctccttcattcaagaa |
565 |
Q |
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| T |
43869898 |
ttatatcaattaaaatttaaaatcaaagtttcatcatctttatccttcgatcaatcaacattctccttcattaaagaa |
43869821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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