View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4801_high_4 (Length: 266)
Name: NF4801_high_4
Description: NF4801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4801_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 51405259 - 51405001
Alignment:
| Q |
1 |
tcctggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgcgtcctccgaagaagattacagcaaccttaaaggaaacttcacttgct |
100 |
Q |
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| T |
51405259 |
tcctggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgcgtcctccgaagaagattacaacaaccttaaaggaaacttcacttgct |
51405160 |
T |
|
| Q |
101 |
tgaacttgacttgttcctccgagaccgcgatcaatcaaaattccaacagaacaaggtgcatgactcaacacgagctcattcattacatgaaatgaatgtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
51405159 |
tgaacttgacttgttcctccgagaccgcgatcaatcaaaattccaacagaacaaggtgcatgactcaacacaagctcattcattacatgaaatgaatgtc |
51405060 |
T |
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| Q |
201 |
ctaatgactccatcgttccatcgatacgctggtgtttatggaatggaaggagtattatc |
259 |
Q |
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| T |
51405059 |
ctaatgactccatcgttccatctatacgctggtgtttatggaatggaaggagtattatc |
51405001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 29981443 - 29981660
Alignment:
| Q |
5 |
ggatgttctgccattctcataccataagcaagtgcttcatgatcgtcgcgtcctccgaagaagattacagcaaccttaaaggaaacttcacttgcttgaa |
104 |
Q |
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||||||||||| ||||||||||| || ||||||||||| |||| || | |||||| ||||| |||| |||| || | ||||| ||||| || || | |
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| T |
29981443 |
ggatgttctgctattctcataccgtacgcaagtgcttctcgatcatcacatcctccaaagaaagctacaacaacattgtaagaaacatcactagcatgga |
29981542 |
T |
|
| Q |
105 |
cttgacttgttcctccgagaccgcgatcaatcaaaattccaacagaacaaggtgcatgactcaacacgagctcattcattacatgaaatgaatgtcctaa |
204 |
Q |
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||||| |||| ||||| || || ||||||| |||||||||||| || ||||| ||||| || | || || |||||||||| |||| || || ||||| |
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| T |
29981543 |
cttgagttgtccctccaaggccacgatcaaccaaaattccaaccgagcaaggagcatggctaagtacaagtccattcattacgcgaaacgagtgccctaa |
29981642 |
T |
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| Q |
205 |
tgactccatcgttccatc |
222 |
Q |
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||| ||||| |||||||| |
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| T |
29981643 |
tgattccatagttccatc |
29981660 |
T |
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