View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4801_high_5 (Length: 260)
Name: NF4801_high_5
Description: NF4801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4801_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 38 - 184
Target Start/End: Original strand, 42851474 - 42851620
Alignment:
| Q |
38 |
attctaggttgaattggaagtctaaattttggatgtaataattagggatgggcaaagttcagtttagaccaagactgtgtcaaaactgaaccataatgca |
137 |
Q |
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| T |
42851474 |
attctaggttgaattggaagtctaaattttggatgtaataattagggatgggcaaagttcagtttagaccaagactgtgtcaaaactgaaccataatgca |
42851573 |
T |
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| Q |
138 |
atagtttgaaccaaactgagttttcaaaatagttaactgttttgatt |
184 |
Q |
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| T |
42851574 |
atagtttgaaccaaactgagttttcaaaatagttaactgttttgatt |
42851620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 80 - 184
Target Start/End: Original strand, 52421782 - 52421895
Alignment:
| Q |
80 |
tagggatgggcaaagttcagtttagaccaagactgtgtcaa-----aactgaaccataatgcaatagtttgaaccaaactga----gttttcaaaatagt |
170 |
Q |
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| T |
52421782 |
tagggatgggcaaagttcagtttagaccaaaactgtgtcaaaactgaactgaaccataatgcaatagtttgaaccaaactgaactggttttcaaaatagt |
52421881 |
T |
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| Q |
171 |
taactgttttgatt |
184 |
Q |
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| T |
52421882 |
taactgttttgatt |
52421895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 38255947 - 38256057
Alignment:
| Q |
83 |
ggatgggcaaagttcagtttagaccaagactgtgtcaaaactgaacc-----ataatgcaatagtttgaaccaaactga----gttttcaaaatagttaa |
173 |
Q |
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| T |
38255947 |
ggatggacaaagttcactttagatgaaaactatgtcaaaattgaaccgagccataatgcaatagtttaaaccaaactgaactggttttcaaaatagttaa |
38256046 |
T |
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| Q |
174 |
ctgttttgatt |
184 |
Q |
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| T |
38256047 |
cttttttgatt |
38256057 |
T |
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